RNU7-38P Gene
pseudogene GIFtS: 11
GCID: GC10M073605
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RNA, U7 small nuclear 38 pseudogene
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Aliases
for RNU7-38P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): snRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| RNA, U7 Small Nuclear 38 Pseudogene1 2 | | U7.381 2 |
| External Ids: | HGNC: 341341 | Entrez Gene: 1001478252 | Ensembl: ENSG000002384467 |
Export aliases for RNU7-38P gene to outside databasesPrevious GC identifers: GC10U901039 GC10M067598
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Summaries
for RNU7-38P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for RNU7-38P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for RNU7-38P
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNU7-38P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU7-38P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 10q22.1 Ensembl cytogenetic band: 10q22.1 HGNC cytogenetic band: 10q22.1RNU7-38P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M073605: view genomic region
(about GC identifiers)
Start:
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73,604,492 bp from pter |
End:
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73,604,551 bp from pter |
Size:
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60 bases |
Orientation:
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minus strand |
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Proteins
for RNU7-38P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for RNU7-38P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for RNU7-38P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Pathways & Interactions
for RNU7-38P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU7-38P
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Drugs & Compounds
for RNU7-38P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNU7-38P
Search CenterWatch for drugs/clinical trials and news about RNU7-38P 
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Transcripts
for RNU7-38P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000459501(snRNA)
GeneLoc Exon Structure
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Expression
for RNU7-38P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNU7-38P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RNU7-38P
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU7-38P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU7-38P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU7-38P |
Orthologs
for RNU7-38P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RNU7-38P (if available)
TreeFam Gene Tree for RNU7-38P (if available) |
Paralogs
for RNU7-38P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNU7-38P gene
- ENSG000002384062 RNU7-66P2 ENSG000002519192 ENSG000002517972 RNU7-22P2 RNU7-10P2 RNU7-75P2 RNU7-88P2
- ENSG000002391642 ENSG000002391512 ENSG000002388422 ENSG000002383332 ENSG000002383572 RNU7-60P2 ENSG000002520752 RNU7-28P2
- ENSG000002387042 RNU7-37P2 ENSG000002385622 ENSG000002383702 RNU7-84P2 ENSG000002384572 RNU7-70P2 ENSG000002520802
- ENSG000002384272 ENSG000002384412 ENSG000002519142 RNU7-52P2 RNU7-85P2 ENSG000002388312 RNU7-77P2 RNU7-29P2
- ENSG000002527022 ENSG000002387882 ENSG000002518392 ENSG000002517802 RNU7-25P2 ENSG000002524132 ENSG000002519642 ENSG000002519372
- RNU7-61P2 ENSG000002526132 RNU7-30P2 ENSG000002384872 RNU7-6P2 RNU7-27P2 RNU7-55P2 ENSG000002387212
- ENSG000002517242 RNU7-41P2 ENSG000002517672 ENSG000002383022 ENSG000002384312 ENSG000002384522 ENSG000002526982 ENSG000002389502
- RNU7-65P2 RNU7-53P2 ENSG000002524062 ENSG000002389872 RNU7-40P2 ENSG000002528722 ENSG000002517552 ENSG000002383102
- ENSG000002524172 ENSG000002530232 ENSG000002522752 ENSG000002525792 RNU7-49P2 RNU7-23P2 RNU7-62P2 ENSG000002387192
- RNU7-24P2 RNU7-67P2 RNU7-11P2 ENSG000002387312 ENSG000002525972 RNU7-54P2 ENSG000002386092 ENSG000002529342
- RNU7-76P2 RNU7-48P2 RNU7-7P2 ENSG000002386892 ENSG000002524692 RNU7-63P2 ENSG000002389982 RNU7-87P2
- ENSG000002383642 ENSG000002530622 RNU7-5P2 ENSG000002386322 RNU7-57P2 ENSG000002387892 ENSG000002384472 ENSG000002390532
- RNU7-47P2 RNU7-71P2 RNU7-13P2 ENSG000002385842 ENSG000002389622 RNU7-69P2 ENSG000002521742 RNU7-81P2
- ENSG000002391682 RNU7-59P2 RNU7-34P2 ENSG000002525322 RNU7-45P2 RNU7-9P2 RNU7-35P2 ENSG000002385232
- RNU7-3P2 RNU7-31P2 RNU7-50P2 ENSG000002529662 ENSG000002527392 ENSG000002517452 RNU7-51P2 RNU7-46P2
- ENSG000002385402 ENSG000002387852 RNU7-58P2 ENSG000002387352 ENSG000002387592 ENSG000002386982 RNU7-21P2 RNU7-74P2
- ENSG000002517202 ENSG000002530982 RNU7-16P2 ENSG000002527002 RNU7-79P2 ENSG000002520032 RNU7-72P2 ENSG000002522422
- RNU7-19P2 ENSG000002388122 ENSG000002389132 ENSG000002389242 ENSG000002525902 RNU7-64P2 ENSG000002387772 ENSG000002523632
- ENSG000002528182 RNU7-12 RNU7-20P2 RNU7-80P2 ENSG000002529102 ENSG000002390072 ENSG000002383742 ENSG000002390712
- RNU7-14P2 ENSG000002391852 ENSG000002385422 ENSG000002389642 ENSG000002522642 ENSG000002391022 ENSG000002530432 ENSG000002530562
- ENSG000002526452 ENSG000002528762 ENSG000002388082 ENSG000002527702 ENSG000002517082 RNU7-73P2 ENSG000002520572 ENSG000002525482
- RNU7-2P2 ENSG000002390822 ENSG000002391192 ENSG000002383802 ENSG000002387302 RNU7-26P2 RNU7-56P2 ENSG000002384192
- ENSG000002530332 ENSG000002524782 ENSG000002527492 ENSG000002524072
RNU7-38P for paralogs About GeneDecksing
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Genomic Variants
for RNU7-38P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RNU7-38P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for RNU7-38P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed article for RNU7-38P gene integrated from 9 sources:
(articles sorted by number of sources associating them with RNU7-38P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- U7 snRNAs: a computational survey. (PubMed id 18267300)1, 3 Marz M....Stadler P.F. (2007)
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External Searches for RNU7-38P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNU7-38P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing RNU7-38P gene
(According to HUGE)
About This Section
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Specialized Databases showing RNU7-38P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for RNU7-38P gene:
Search GeneIP for patents involving RNU7-38P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RNU7-38P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU7-38P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU7-38P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU7-38P | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU7-38P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU7-38P | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU7-38P |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RNU7-38P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU7-38P |
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GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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