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Aliases for RNU7-21P Gene

Subcategory (RNA class) for RNU7-21P Gene

snRNA

Aliases for RNU7-21P Gene

  • RNA, U7 Small Nuclear 21 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.21 Pseudogene 3
  • U7.21 3

External Ids for RNU7-21P Gene

ORGUL Members for RNU7-21P Gene

Previous GeneCards Identifiers for RNU7-21P Gene

  • GC09U901039
  • GC09P135840
  • GC09P105332

Summaries for RNU7-21P Gene

GeneCards Summary for RNU7-21P Gene

RNU7-21P (RNA, U7 Small Nuclear 21 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-21P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-21P Gene

Genomics for RNU7-21P Gene

GeneHancer (GH) Regulatory Elements for RNU7-21P Gene

Promoters and enhancers for RNU7-21P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I132994 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.7 +31.1 31092 1.1 HDGF ATF1 TCF12 CBX5 GATA2 FOS ATF7 NCOA1 REST MEF2D RNU7-21P RPL39P24 GTF3C5 OBP2B GC09P133067 GC09P133102 GC09P133101 GC09P133086 GC09P132965
GH09I133022 Enhancer 1.2 Ensembl ENCODE 11.8 +58.8 58752 0.6 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 CBX5 E2F8 GC09P133078 GC09P133089 GC09P133090 GC09P133092 GC09P133093 GC09P133098 GC09P133100 GC09P133111 PIR47294 PIR35502
GH09I132768 Promoter/Enhancer 1.3 Ensembl ENCODE 10.3 -193.8 -193834 2.3 HDGF ELF3 SMAD1 ARID4B DMAP1 YY1 THAP11 ZHX2 ELF1 KAT8 ENSG00000224992 RNU7-21P RPL39P24 GC09M132712 AK8
GH09I132885 Enhancer 0.8 ENCODE dbSUPER 10.4 -77.6 -77564 1 FOXA2 RFX1 FOXA3 CEBPB FOXA1 NFIC CTBP1 SCRT2 CEBPA PRDM10 PIR61136 RNU7-21P RPL39P24 TSC1 GFI1B AK8 SPACA9
GH09I132744 Enhancer 0.8 UCNEbase 10.3 -218.9 -218901 0.3 SP2 OSR2 PRDM6 ZSCAN16 GLIS1 PATZ1 ZNF341 CTBP2 ZNF600 WT1 AK8 SPACA9 RNU7-21P RPL39P24 ENSG00000224992 GC09M132712
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-21P Gene

Genomic Locations for RNU7-21P Gene
chr9:132,963,732-132,963,793
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr9:135,839,119-135,839,180
(GRCh37/hg19)

Genomic View for RNU7-21P Gene

Genes around RNU7-21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-21P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-21P Gene

Proteins for RNU7-21P Gene

Post-translational modifications for RNU7-21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-21P Gene

Domains & Families for RNU7-21P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-21P Gene

Function for RNU7-21P Gene

Phenotypes From GWAS Catalog for RNU7-21P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-21P Gene

Localization for RNU7-21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-21P Gene

Pathways & Interactions for RNU7-21P Gene

SuperPathways for RNU7-21P Gene

No Data Available

Interacting Proteins for RNU7-21P Gene

Gene Ontology (GO) - Biological Process for RNU7-21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-21P Gene

Drugs & Compounds for RNU7-21P Gene

No Compound Related Data Available

Transcripts for RNU7-21P Gene

mRNA/cDNA for RNU7-21P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-21P Gene

No ASD Table

Relevant External Links for RNU7-21P Gene

GeneLoc Exon Structure for
RNU7-21P
ECgene alternative splicing isoforms for
RNU7-21P

Expression for RNU7-21P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-21P Gene

Orthologs for RNU7-21P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-21P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 98 (a)
OneToOne
Species where no ortholog for RNU7-21P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-21P Gene

ENSEMBL:
Gene Tree for RNU7-21P (if available)
TreeFam:
Gene Tree for RNU7-21P (if available)

Paralogs for RNU7-21P Gene

No data available for Paralogs for RNU7-21P Gene

Variants for RNU7-21P Gene

Additional Variant Information for RNU7-21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-21P Gene

Disorders for RNU7-21P Gene

Additional Disease Information for RNU7-21P

Genetic Association Database
(GAD)

No disorders were found for RNU7-21P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-21P Gene

Publications for RNU7-21P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58
  2. Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry. (PMID: 19416921) Scott LJ … Boehnke M (Proceedings of the National Academy of Sciences of the United States of America 2009) 44 58

Products for RNU7-21P Gene

Sources for RNU7-21P Gene

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