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Aliases for RNU7-18P Gene

Subcategory (RNA class) for RNU7-18P Gene

snRNA

Aliases for RNU7-18P Gene

  • RNA, U7 Small Nuclear 18 Pseudogene 2 3 5
  • RNA, U7 Small Nuclear 142 Pseudogene 2 3
  • RNA, Small Nuclear U7.18 Pseudogene 3
  • RNU7-142P 3
  • U7.18 3

External Ids for RNU7-18P Gene

ORGUL Members for RNU7-18P Gene

Previous HGNC Symbols for RNU7-18P Gene

  • RNU7-142P

Previous GeneCards Identifiers for RNU7-18P Gene

  • GC03U900888
  • GC03P195799

Summaries for RNU7-18P Gene

GeneCards Summary for RNU7-18P Gene

RNU7-18P (RNA, U7 Small Nuclear 18 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-18P Gene

Genomics for RNU7-18P Gene

Regulatory Elements for RNU7-18P Gene

Enhancers for RNU7-18P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F196188 1.3 FANTOM5 Ensembl ENCODE 12.7 +120.1 120082 8.6 HDGF PKNOX1 ARID4B YBX1 ZNF48 ZNF121 GLIS2 ELK1 GATA2 ZNF143 ENSG00000226345 ENSG00000213358 RPS29P3 RNU7-18P TFRC TM4SF19 RNU6-910P SLC51A UBXN7 LINC00885
GH03F196111 1.3 Ensembl ENCODE 12.2 +40.0 39956 2.3 PKNOX1 MTA2 TBX21 YY1 RELA SCRT2 IKZF1 NFYB HNF4G NBN TFRC RNU7-18P MUC4 SDHAP1 LINC00969 GC03M196081 LINC00885
GH03F196109 1 Ensembl ENCODE 12.2 +37.9 37873 1.6 HDAC1 CBX3 ATF1 TBL1XR1 THRB RAD21 ZBTB40 BRCA1 RFX5 POLR3A TFRC RNU7-18P ENSG00000271662 ENSG00000231443 ENSG00000260261 LINC00969 GC03M196081 LINC00885
GH03F196107 0.9 Ensembl ENCODE 12.2 +35.4 35412 1.6 ATF1 ARNT CBX5 GATA2 FOS KLF13 NCOA1 REST SMARCB1 ZNF592 MUC4 TFRC RNU7-18P LINC00969 MUC20 ENSG00000231443 GC03M196081 LINC00885
GH03F196114 0.9 Ensembl ENCODE 12.2 +43.9 43886 3.8 HDGF TBP PKNOX1 TBL1XR1 CREM EGR2 CBFB TBX21 SP1 RAD51 TFRC RNU7-18P MUC20P1 ENSG00000271662 MUC20 GC03M196081 LINC00885
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU7-18P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-18P Gene

Chromosome:
3
Start:
196,072,819 bp from pter
End:
196,072,880 bp from pter
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-18P Gene

Genes around RNU7-18P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-18P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-18P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-18P Gene

Proteins for RNU7-18P Gene

Post-translational modifications for RNU7-18P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-18P Gene

Domains & Families for RNU7-18P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-18P Gene

Function for RNU7-18P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-18P Gene

Localization for RNU7-18P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU7-18P Gene

Pathways & Interactions for RNU7-18P Gene

SuperPathways for RNU7-18P Gene

No Data Available

Interacting Proteins for RNU7-18P Gene

Gene Ontology (GO) - Biological Process for RNU7-18P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-18P Gene

Transcripts for RNU7-18P Gene

mRNA/cDNA for RNU7-18P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-18P Gene

No ASD Table

Relevant External Links for RNU7-18P Gene

GeneLoc Exon Structure for
RNU7-18P
ECgene alternative splicing isoforms for
RNU7-18P

Expression for RNU7-18P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU7-18P Gene

Orthologs for RNU7-18P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-18P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 35
  • 100 (a)
OneToOne
Species where no ortholog for RNU7-18P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-18P Gene

ENSEMBL:
Gene Tree for RNU7-18P (if available)
TreeFam:
Gene Tree for RNU7-18P (if available)

Paralogs for RNU7-18P Gene

No data available for Paralogs for RNU7-18P Gene

Variants for RNU7-18P Gene

Relevant External Links for RNU7-18P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-18P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-18P Gene

Disorders for RNU7-18P Gene

No disorders were found for RNU7-18P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-18P Gene

Publications for RNU7-18P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M. … Stadler P.F. (Genomics Proteomics Bioinformatics 2007) 2 3 64

Products for RNU7-18P Gene

Sources for RNU7-18P Gene

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