Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU7-17P Gene

Subcategory (RNA class) for RNU7-17P Gene

snRNA

Aliases for RNU7-17P Gene

  • RNA, U7 Small Nuclear 17 Pseudogene 2 3
  • RNA, Small Nuclear U7.17 Pseudogene 3
  • U7.17 3

External Ids for RNU7-17P Gene

ORGUL Members for RNU7-17P Gene

Previous GeneCards Identifiers for RNU7-17P Gene

  • GC18U900360
  • GC18P019623
  • GC18P019561

Summaries for RNU7-17P Gene

GeneCards Summary for RNU7-17P Gene

RNU7-17P (RNA, U7 Small Nuclear 17 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-17P Gene

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

Additional gene information for RNU7-17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-17P Gene

Genomics for RNU7-17P Gene

GeneHancer (GH) Regulatory Elements for RNU7-17P Gene

Promoters and enhancers for RNU7-17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I022043 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 550.8 +1.8 1841 4 MEIS2 TEAD4 CBFA2T3 CBFA2T2 HNF4A GC18P022044 RNU7-17P ABHD3 ENSG00000265656 GC18P022048 LINC01900 GC18P021970
GH18I022041 Enhancer 0.2 dbSUPER 550.8 -1.5 -1536 1 GC18P022044 RNU7-17P ABHD3 LINC01900 GC18P021970
GH18I022031 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -10.8 -10845 2.3 HDAC1 PKNOX1 FOXA2 KLF17 SIN3A FEZF1 BATF ZNF121 ZNF366 EGR1 GREB1L RNU7-17P LINC01900 GC18P021970
GH18I021995 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -43.9 -43895 7.8 PKNOX1 FOXA2 ZSCAN4 ARID4B MZF1 DMAP1 ZNF2 THRB ZNF48 RAD21 ESCO1 ABHD3 ENSG00000265656 LINC01900 GC18P021970 RNU7-17P
GH18I022040 Enhancer 0.4 ENCODE 0.8 -2.6 -2592 0.1 GATA3 HNF4G HNF4A RNU7-17P LINC01900 GC18P021970
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-17P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-17P Gene

Genomic Locations for RNU7-17P Gene
chr18:22,043,357-22,043,418
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr18:19,561,082-19,631,120
(GRCh37/hg19)

Genomic View for RNU7-17P Gene

Genes around RNU7-17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-17P Gene

Proteins for RNU7-17P Gene

Post-translational modifications for RNU7-17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-17P Gene

Domains & Families for RNU7-17P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-17P Gene

Function for RNU7-17P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-17P Gene

Localization for RNU7-17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-17P Gene

Pathways & Interactions for RNU7-17P Gene

SuperPathways for RNU7-17P Gene

No Data Available

Interacting Proteins for RNU7-17P Gene

Gene Ontology (GO) - Biological Process for RNU7-17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-17P Gene

Drugs & Compounds for RNU7-17P Gene

No Compound Related Data Available

Transcripts for RNU7-17P Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-17P Gene

No ASD Table

Relevant External Links for RNU7-17P Gene

GeneLoc Exon Structure for
RNU7-17P
ECgene alternative splicing isoforms for
RNU7-17P

No data available for mRNA/cDNA for RNU7-17P Gene

Expression for RNU7-17P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-17P Gene

Orthologs for RNU7-17P Gene

No data available for Orthologs and Evolution for RNU7-17P Gene

Paralogs for RNU7-17P Gene

No data available for Paralogs for RNU7-17P Gene

Variants for RNU7-17P Gene

Additional Variant Information for RNU7-17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-17P Gene

Disorders for RNU7-17P Gene

Additional Disease Information for RNU7-17P

Genetic Association Database
(GAD)

No disorders were found for RNU7-17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-17P Gene

Publications for RNU7-17P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 44 58

Products for RNU7-17P Gene

Sources for RNU7-17P Gene

Content
Loading form....