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Aliases for RNU7-17P Gene

Subcategory (RNA class) for RNU7-17P Gene

snRNA

Aliases for RNU7-17P Gene

  • RNA, U7 Small Nuclear 17 Pseudogene 2 3
  • RNA, Small Nuclear U7.17 Pseudogene 3
  • U7.17 3

External Ids for RNU7-17P Gene

ORGUL Members for RNU7-17P Gene

Previous GeneCards Identifiers for RNU7-17P Gene

  • GC18U900360
  • GC18P019623
  • GC18P019561

Summaries for RNU7-17P Gene

GeneCards Summary for RNU7-17P Gene

RNU7-17P (RNA, U7 Small Nuclear 17 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-17P Gene

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

Additional gene information for RNU7-17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-17P Gene

Genomics for RNU7-17P Gene

Regulatory Elements for RNU7-17P Gene

Enhancers for RNU7-17P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18H022031 1.4 Ensembl ENCODE dbSUPER 0.4 -10.8 -10845 2 HDAC1 PKNOX1 FOXA2 KLF17 SIN3A FEZF1 BATF ZNF121 EGR1 ZNF366 GREB1L RNU7-17P LINC01900
GH18H021995 1.4 Ensembl ENCODE dbSUPER 0.3 -43.9 -43895 7 PKNOX1 FOXA2 ZSCAN4 ARID4B DMAP1 ZNF2 THRB RAD21 RARA ZSCAN5C ESCO1 ABHD3 ENSG00000265656 LINC01900 RNU7-17P
GH18H022040 0.5 ENCODE 0.7 -2.6 -2593 0 GATA3 HNF4G HNF4A RNU7-17P LINC01900
GH18H022016 1.1 ENCODE dbSUPER 0.3 -23.1 -23126 6 SOX13 CEBPG ZNF384 ZNF644 RAD21 RARA ZNF7 ZKSCAN1 PRDM10 NFE2 GREB1L RNU7-17P LINC01900
GH18H022025 0.7 ENCODE dbSUPER 0.4 -16.9 -16911 2 POLR2A ZNF341 ZIC2 RNU7-17P LINC01900
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU7-17P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-17P Gene

Chromosome:
18
Start:
22,043,357 bp from pter
End:
22,043,418 bp from pter
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-17P Gene

Genes around RNU7-17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-17P Gene

Proteins for RNU7-17P Gene

Post-translational modifications for RNU7-17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-17P Gene

Domains & Families for RNU7-17P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-17P Gene

Function for RNU7-17P Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU7-17P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-17P Gene

Localization for RNU7-17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-17P Gene

Pathways & Interactions for RNU7-17P Gene

SuperPathways for RNU7-17P Gene

No Data Available

Interacting Proteins for RNU7-17P Gene

Gene Ontology (GO) - Biological Process for RNU7-17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-17P Gene

Drugs & Compounds for RNU7-17P Gene

No Compound Related Data Available

Transcripts for RNU7-17P Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU7-17P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-17P Gene

No ASD Table

Relevant External Links for RNU7-17P Gene

GeneLoc Exon Structure for
RNU7-17P
ECgene alternative splicing isoforms for
RNU7-17P

No data available for mRNA/cDNA for RNU7-17P Gene

Expression for RNU7-17P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-17P Gene

Orthologs for RNU7-17P Gene

No data available for Orthologs and Evolution for RNU7-17P Gene

Paralogs for RNU7-17P Gene

No data available for Paralogs for RNU7-17P Gene

Variants for RNU7-17P Gene

Relevant External Links for RNU7-17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-17P Gene

Disorders for RNU7-17P Gene

Relevant External Links for RNU7-17P

Genetic Association Database (GAD)
RNU7-17P

No disorders were found for RNU7-17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-17P Gene

Publications for RNU7-17P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 60
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 45 60

Products for RNU7-17P Gene

Sources for RNU7-17P Gene

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