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Aliases for RNU7-179P Gene

Subcategory (RNA class) for RNU7-179P Gene

snRNA

Aliases for RNU7-179P Gene

  • RNA, U7 Small Nuclear 179 Pseudogene 2 3 5

External Ids for RNU7-179P Gene

ORGUL Members for RNU7-179P Gene

Previous GeneCards Identifiers for RNU7-179P Gene

  • GC01M015940

Summaries for RNU7-179P Gene

GeneCards Summary for RNU7-179P Gene

RNU7-179P (RNA, U7 Small Nuclear 179 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-179P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

View fRNAdb secondary structures for RNU7-179P

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-179P Gene

Genomics for RNU7-179P Gene

Regulatory Elements for RNU7-179P Gene

Enhancers for RNU7-179P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G015696 1.4 Ensembl ENCODE dbSUPER 10.8 -89.4 -89417 1.9 TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A BMI1 ZNF121 EGR1 ELK1 RELB SLC25A34 ENSG00000237938 RSC1A1 FBLIM1 RNU7-179P ENSG00000251866 PLEKHM2 FAM131C PIR54516 PIR59281
GH01G015578 1.2 Ensembl ENCODE dbSUPER 11.5 +28.2 28223 2.9 MNT ZBTB40 ZBTB7A ZEB1 ZFHX2 ZNF766 POLR2A BCL6B MLLT1 EGR2 ENSG00000251866 RNU7-179P PLEKHM2 RSC1A1 AGMAT PIR62159
GH01G015629 1 ENCODE dbSUPER 11.2 -22.2 -22172 1.1 NFIB KLF17 ZNF195 SALL2 ZNF776 PRDM10 ZNF571 ZNF662 ZNF491 ZNF623 SLC25A34 NBPF1 RSC1A1 PLEKHM2 RNU7-179P ENSG00000237938 ENSG00000251866 LINC01772 SPEN FBLIM1
GH01G015631 0.8 dbSUPER 11.2 -23.2 -23212 0.7 CTCF NFIB ZNF195 SALL2 RAD21 ZNF776 PATZ1 PRDM10 ZNF571 ZNF662 SLC25A34 NBPF1 RSC1A1 AGMAT PLEKHM2 RNU7-179P ENSG00000237938 ENSG00000251866 LINC01772 SPEN
GH01G015700 0.7 dbSUPER 10.8 -92.4 -92394 0.9 CTCF SCRT1 KLF1 SP3 MAZ AGO1 SP2 SP1 GLIS2 POLR2A SLC25A34 ENSG00000237938 RSC1A1 FBLIM1 RNU7-179P ENSG00000251866 PLEKHM2 PIR54516 PIR59281
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU7-179P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-179P Gene

Chromosome:
1
Start:
15,608,078 bp from pter
End:
15,608,145 bp from pter
Size:
68 bases
Orientation:
Minus strand

Genomic View for RNU7-179P Gene

Genes around RNU7-179P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-179P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-179P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for RNU7-179P Gene

ORGUL Member Location for RNU7-179P gene

No data available for RefSeq DNA sequence for RNU7-179P Gene

Proteins for RNU7-179P Gene

Post-translational modifications for RNU7-179P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-179P Gene

Domains & Families for RNU7-179P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-179P Gene

Function for RNU7-179P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-179P Gene

Localization for RNU7-179P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU7-179P Gene

Pathways & Interactions for RNU7-179P Gene

SuperPathways for RNU7-179P Gene

No Data Available

Interacting Proteins for RNU7-179P Gene

Gene Ontology (GO) - Biological Process for RNU7-179P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-179P Gene

Drugs & Compounds for RNU7-179P Gene

No Compound Related Data Available

Transcripts for RNU7-179P Gene

fRNAdb Secondary structures for RNU7-179P Gene

  • FR264192

mRNA/cDNA for RNU7-179P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-179P Gene

No ASD Table

Relevant External Links for RNU7-179P Gene

GeneLoc Exon Structure for
RNU7-179P
ECgene alternative splicing isoforms for
RNU7-179P

Expression for RNU7-179P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-179P Gene

Orthologs for RNU7-179P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU7-179P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 35
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U7 35
  • 62 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U7 35
  • 58 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm26010 35
  • 51 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U7 35
  • 56 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U7 35
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U7 35
  • 63 (a)
OneToMany
Species where no ortholog for RNU7-179P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU7-179P Gene

ENSEMBL:
Gene Tree for RNU7-179P (if available)
TreeFam:
Gene Tree for RNU7-179P (if available)

Paralogs for RNU7-179P Gene

No data available for Paralogs for RNU7-179P Gene

Variants for RNU7-179P Gene

Relevant External Links for RNU7-179P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-179P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-179P Gene

Disorders for RNU7-179P Gene

No disorders were found for RNU7-179P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-179P Gene

Publications for RNU7-179P Gene

  1. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C. … SchA1mperli D. (Nucleic Acids Res. 1994) 1
  2. Identification of the human U7 snRNP as one of several factors involved in the 3' end maturation of histone premessenger RNA's. (PMID: 2825355) Mowry K.L. … Steitz J.A. (Science 1987) 1

Products for RNU7-179P Gene

Sources for RNU7-179P Gene

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