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Aliases for RNU7-171P Gene

Subcategory (RNA class) for RNU7-171P Gene


Aliases for RNU7-171P Gene

  • RNA, U7 Small Nuclear 171 Pseudogene 2 3 5

External Ids for RNU7-171P Gene

ORGUL Members for RNU7-171P Gene

Previous GeneCards Identifiers for RNU7-171P Gene

  • GC09P131308

Summaries for RNU7-171P Gene

GeneCards Summary for RNU7-171P Gene

RNU7-171P (RNA, U7 Small Nuclear 171 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-171P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-171P Gene

Genomics for RNU7-171P Gene

Regulatory Elements for RNU7-171P Gene

Enhancers for RNU7-171P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F128574 0.2 ENCODE 11.4 +31.9 31889 2.0 PAF1 ZNF263 KLF1 CEBPB SPTAN1 LOC101929270 RNU7-171P URM1 ENSG00000280474
GH09F128512 0.9 ENCODE 11.2 -31.7 -31710 0.1 HDGF PKNOX1 MTA2 POLR2A IKZF1 NBN PRDM10 TBX21 SPI1 SPTAN1 LOC101929270 RNU7-171P PKN3 LOC100506100 ZDHHC12 GLE1
GH09F128607 0.9 ENCODE 11 +63.8 63759 1.3 PAF1 NFYA CEBPB MAX RAD21 YY1 ATF3 SMC3 RCOR1 TCF7L2 SPTAN1 LOC101929270 PKN3 RNU7-171P LOC100506100 ZDHHC12 ZER1 ENSG00000280474 ENSG00000280758
GH09F128628 0.7 ENCODE 10.9 +84.5 84533 0.9 KLF1 PKNOX1 RAD21 YY1 HIC1 POLR2A HNF4G PRDM10 ZNF652 GATAD2A LOC101929270 RNU7-171P CERCAM ENSG00000280758 ENSG00000280474
GH09F128631 0.9 Ensembl ENCODE 10.9 +91.1 91107 6.9 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF207 LOC101929270 LOC101929314 SPOUT1 PKN3 CDK9 LOC100506100 ZDHHC12 ODF2 LOC100129352 RNU7-171P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU7-171P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU7-171P Gene

128,543,916 bp from pter
128,543,977 bp from pter
62 bases
Plus strand

Genomic View for RNU7-171P Gene

Genes around RNU7-171P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-171P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-171P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-171P Gene

ORGUL Member Location for RNU7-171P Gene

ORGUL Member Location for RNU7-171P gene

Proteins for RNU7-171P Gene

Post-translational modifications for RNU7-171P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-171P Gene

Domains & Families for RNU7-171P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-171P Gene

Function for RNU7-171P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-171P Gene

Localization for RNU7-171P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU7-171P Gene

Pathways & Interactions for RNU7-171P Gene

SuperPathways for RNU7-171P Gene

No Data Available

Interacting Proteins for RNU7-171P Gene

Gene Ontology (GO) - Biological Process for RNU7-171P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU7-171P Gene

Transcripts for RNU7-171P Gene

mRNA/cDNA for RNU7-171P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-171P Gene

No ASD Table

Relevant External Links for RNU7-171P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU7-171P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU7-171P Gene

Orthologs for RNU7-171P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-171P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U7 35
  • 97 (a)
Species where no ortholog for RNU7-171P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-171P Gene

Gene Tree for RNU7-171P (if available)
Gene Tree for RNU7-171P (if available)

Paralogs for RNU7-171P Gene

No data available for Paralogs for RNU7-171P Gene

Variants for RNU7-171P Gene

Relevant External Links for RNU7-171P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-171P Gene

Disorders for RNU7-171P Gene

No disorders were found for RNU7-171P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-171P Gene

Publications for RNU7-171P Gene

  1. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C. … SchA1mperli D. (Nucleic Acids Res. 1994) 1
  2. Identification of the human U7 snRNP as one of several factors involved in the 3' end maturation of histone premessenger RNA's. (PMID: 2825355) Mowry K.L. … Steitz J.A. (Science 1987) 1

Products for RNU7-171P Gene

Sources for RNU7-171P Gene

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