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Aliases for RNU7-11P Gene

Subcategory (RNA class) for RNU7-11P Gene

snRNA

Aliases for RNU7-11P Gene

  • RNA, U7 Small Nuclear 11 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.11 Pseudogene 3
  • U7.11 3

External Ids for RNU7-11P Gene

ORGUL Members for RNU7-11P Gene

Previous GeneCards Identifiers for RNU7-11P Gene

  • GC04U900862

Summaries for RNU7-11P Gene

GeneCards Summary for RNU7-11P Gene

RNU7-11P (RNA, U7 Small Nuclear 11 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-11P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-11P Gene

Genomics for RNU7-11P Gene

GeneHancer (GH) Regulatory Elements for RNU7-11P Gene

Promoters and enhancers for RNU7-11P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I039538 Enhancer 0.8 ENCODE 12 -79.0 -79033 7.3 PKNOX1 FOXA2 NEUROD1 SIN3A FEZF1 BMI1 ZNF121 EGR1 ZNF366 SCRT2 WDR19 RFC1 RPL9 KLF3-AS1 PDS5A RNU7-11P LOC105374419 SMIM14 N4BP2 UGDH-AS1
GH04I039585 Enhancer 0.3 dbSUPER 13.3 -33.9 -33858 3.4 FOS RNU7-11P SMIM14 LOC105374419 RFC1 RNU6-32P UGDH-AS1 RPL9 GC04M039547
GH04I039573 Enhancer 0.3 dbSUPER 12.6 -46.7 -46706 2 RNF2 RNU7-11P SMIM14 LOC105374419 GC04M039547 UGDH-AS1
GH04I039620 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 +2.9 2934 7.9 HDGF PKNOX1 ARID4B FEZF1 IRF4 ZNF121 ZNF143 ATF7 FOS RUNX3 PDS5A N4BP2 RFC1 SMIM14 WDR19 RPL9 GC04P039621 RNU7-11P LOC105374419
GH04I039617 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.8 -2.7 -2706 1.6 FOXA2 EBF1 ZIC2 ATF7 BCLAF1 HOMEZ IKZF2 RUNX3 HLF NR2F1 RPL9 SMIM14 RNU7-11P GC04M039547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-11P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-11P Gene

Genomic Locations for RNU7-11P Gene
chr4:39,621,012-39,621,073
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr4:39,622,632-39,622,693
(GRCh37/hg19)

Genomic View for RNU7-11P Gene

Genes around RNU7-11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-11P Gene

Proteins for RNU7-11P Gene

Post-translational modifications for RNU7-11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-11P Gene

Domains & Families for RNU7-11P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-11P Gene

Function for RNU7-11P Gene

Phenotypes From GWAS Catalog for RNU7-11P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-11P Gene

Localization for RNU7-11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-11P Gene

Pathways & Interactions for RNU7-11P Gene

SuperPathways for RNU7-11P Gene

No Data Available

Interacting Proteins for RNU7-11P Gene

Gene Ontology (GO) - Biological Process for RNU7-11P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-11P Gene

Drugs & Compounds for RNU7-11P Gene

No Compound Related Data Available

Transcripts for RNU7-11P Gene

mRNA/cDNA for RNU7-11P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-11P Gene

No ASD Table

Relevant External Links for RNU7-11P Gene

GeneLoc Exon Structure for
RNU7-11P
ECgene alternative splicing isoforms for
RNU7-11P

Expression for RNU7-11P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-11P Gene

Orthologs for RNU7-11P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-11P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34 34
  • 98 (a)
OneToMany
Species where no ortholog for RNU7-11P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-11P Gene

ENSEMBL:
Gene Tree for RNU7-11P (if available)
TreeFam:
Gene Tree for RNU7-11P (if available)

Paralogs for RNU7-11P Gene

No data available for Paralogs for RNU7-11P Gene

Variants for RNU7-11P Gene

Additional Variant Information for RNU7-11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-11P Gene

Disorders for RNU7-11P Gene

No disorders were found for RNU7-11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-11P Gene

Publications for RNU7-11P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for RNU7-11P Gene

Sources for RNU7-11P Gene

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