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Aliases for RNU6V Gene

Aliases for RNU6V Gene

  • RNA, U6 Small Nuclear Variant Sequence With SNRPE Pseudogene Sequence 2 3 5
  • Small Nuclear Ribonucleoprotein E Pseudogene 3
  • 87U6 3
  • LH87 3

External Ids for RNU6V Gene

Previous GeneCards Identifiers for RNU6V Gene

  • GC01U990144
  • GC01M110133
  • GC01M108026

Summaries for RNU6V Gene

GeneCards Summary for RNU6V Gene

RNU6V (RNA, U6 Small Nuclear Variant Sequence With SNRPE Pseudogene Sequence) is a Pseudogene.

Additional gene information for RNU6V Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6V Gene

Genomics for RNU6V Gene

Regulatory Elements for RNU6V Gene

Enhancers for RNU6V Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H109643 1.4 Ensembl ENCODE dbSUPER 11.6 -51.9 -51934 0.7 HDGF RB1 ARID4B ZNF2 RAD21 ZEB1 GLIS2 SCRT2 ZNF143 ATF7 GSTM4 GNAT2 AMPD2 GNAI3 MIR197 ENSG00000225113 RNU6V GSTM3 GC01M109631 RPL7P8
GH01H110002 1.6 Ensembl ENCODE dbSUPER 9.9 -412.5 -412466 3 PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 FOS JUNB RPS27P6 STRIP1 ENSG00000258634 GSTM3 ENSG00000225113 RNU6V CSF1 UBL4B AHCYL1
GH01H109761 1.5 Ensembl ENCODE dbSUPER 10 -173.2 -173189 5.9 ATF1 MLX ZFP64 ARID4B DMAP1 SLC30A9 ZNF766 ELK1 ATF7 FOS GSTM3 AHCYL1 ENSG00000228703 AMPD2 ENSG00000254942 GPR61 GNAT2 ENSG00000258634 GNAI3 CSF1
GH01H109725 1.2 ENCODE dbSUPER 10.3 -134.4 -134369 1.6 HDAC1 ARNT ZBTB40 TCF12 CBX5 GATA2 FOS RCOR1 ATF7 CREM GSTM3 GSTM5 EPS8L3 ENSG00000228703 AMPD2 AHCYL1 GPR61 ENSG00000225113 AMIGO1 RNU6V
GH01H109563 1 Ensembl ENCODE 11.8 +27.5 27518 2.2 PKNOX1 ZNF362 CEBPG ZEB2 ZNF384 NR3C1 ZNF398 CTBP1 PRDM6 SMARCA4 GPR61 RNU6V AMPD2 ENSG00000228703 GNAT2 ENSG00000254942 ENSG00000225113 MIR197 GSTM2 GNAI3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6V on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6V Gene

Genomic Locations for RNU6V Gene
chr1:109,591,305-109,591,640
(GRCh38/hg38)
Size:
336 bases
Orientation:
Minus strand
chr1:110,133,927-110,134,262
(GRCh37/hg19)

Genomic View for RNU6V Gene

Genes around RNU6V on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6V Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6V Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6V Gene

Proteins for RNU6V Gene

Post-translational modifications for RNU6V Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6V Gene

Domains & Families for RNU6V Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6V Gene

Function for RNU6V Gene

Molecular function for RNU6V Gene

GENATLAS Biochemistry:
RNA,U6 small nuclear gene,uridin rich,embedded in intron 7 of GNAI3 in opposite orientation

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6V Gene

Localization for RNU6V Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6V Gene

Pathways & Interactions for RNU6V Gene

SuperPathways for RNU6V Gene

No Data Available

Interacting Proteins for RNU6V Gene

Gene Ontology (GO) - Biological Process for RNU6V Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6V Gene

Drugs & Compounds for RNU6V Gene

No Compound Related Data Available

Transcripts for RNU6V Gene

mRNA/cDNA for RNU6V Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6V Gene

No ASD Table

Relevant External Links for RNU6V Gene

GeneLoc Exon Structure for
RNU6V
ECgene alternative splicing isoforms for
RNU6V

Expression for RNU6V Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6V Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6V Gene:

RNU6V
genes like me logo Genes that share expression patterns with RNU6V: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6V Gene

Orthologs for RNU6V Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6V Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24267 34
  • 93 (a)
ManyToMany
Gm26166 34
  • 89 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 92 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34 34 34
  • 90 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 80 (a)
OneToOne
Species where no ortholog for RNU6V was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6V Gene

ENSEMBL:
Gene Tree for RNU6V (if available)
TreeFam:
Gene Tree for RNU6V (if available)

Paralogs for RNU6V Gene

No data available for Paralogs for RNU6V Gene

Variants for RNU6V Gene

Relevant External Links for RNU6V Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6V

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6V Gene

Disorders for RNU6V Gene

No disorders were found for RNU6V Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6V Gene

Publications for RNU6V Gene

  1. A U6 snRNA gene with an internal promoter is juxtaposed to an snRNP protein sequence within an intron of a human G protein gene. (PMID: 1829158) Wieben ED … Stanford DR (Nucleic acids research 1991) 2 3 60

Products for RNU6V Gene

Sources for RNU6V Gene

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