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Aliases for RNU6V Gene

Aliases for RNU6V Gene

  • RNA, U6 Small Nuclear Variant Sequence With SNRPE Pseudogene Sequence 2 3 5
  • Small Nuclear Ribonucleoprotein E Pseudogene 3
  • 87U6 3
  • LH87 3

External Ids for RNU6V Gene

Previous GeneCards Identifiers for RNU6V Gene

  • GC01U990144
  • GC01M110133
  • GC01M108026

Summaries for RNU6V Gene

GeneCards Summary for RNU6V Gene

RNU6V (RNA, U6 Small Nuclear Variant Sequence With SNRPE Pseudogene Sequence) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6V Gene

Genomics for RNU6V Gene

Regulatory Elements for RNU6V Gene

Enhancers for RNU6V Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F109566 0.4 Ensembl 11.8 +24.9 24940 0.2 RNU6V AMPD2 ENSG00000228703 GNAT2 GPR61 ENSG00000254942 ENSG00000225113 MIR197 GC01M109593
GH01F109567 0.5 Ensembl 11.8 +22.9 22940 2.2 SMARCA4 GLIS1 CEBPA PRDM10 ZNF600 PRDM1 ZNF18 MIR197 RNU6V AMPD2 GNAT2 ENSG00000225113 ENSG00000254942 GPR61 ENSG00000228703 GNAI3 CYB561D1
GH01F109561 0.8 Ensembl ENCODE 11.7 +27.8 27840 4.8 PKNOX1 SREBF2 KLF17 ZNF2 RAD21 ZNF335 SCRT2 ZNF143 CREM ZNF362 GPR61 RNU6V AMPD2 ENSG00000228703 GNAT2 ENSG00000225113 AMIGO1 GSTM2 MIR197 GC01M109593
GH01F109643 0.6 Ensembl ENCODE 11.6 -52.1 -52061 1.0 HDGF ARID4B ZNF2 RAD21 ZEB1 GLIS2 SCRT2 ZNF143 CREM DEK GSTM4 GNAT2 AMPD2 GNAI3 MIR197 ENSG00000225113 RNU6V GSTM3 GC01M109631 RPL7P8
GH01F109725 0.6 ENCODE 10.3 -134.4 -134369 1.6 HDAC1 CBX3 PKNOX1 ARNT ZBTB40 GATA2 RCOR1 FOS CREM CEBPB GSTM3 GSTM5 EPS8L3 ENSG00000228703 AMPD2 AHCYL1 GPR61 ENSG00000225113 AMIGO1 RNU6V
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6V on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6V Gene

Chromosome:
1
Start:
109,591,305 bp from pter
End:
109,591,640 bp from pter
Size:
336 bases
Orientation:
Minus strand

Genomic View for RNU6V Gene

Genes around RNU6V on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6V Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6V Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6V Gene

Proteins for RNU6V Gene

Post-translational modifications for RNU6V Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6V Gene

Domains & Families for RNU6V Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6V Gene

Function for RNU6V Gene

Molecular function for RNU6V Gene

GENATLAS Biochemistry:
RNA,U6 small nuclear gene,uridin rich,embedded in intron 7 of GNAI3 in opposite orientation

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6V Gene

Localization for RNU6V Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6V Gene

Pathways & Interactions for RNU6V Gene

SuperPathways for RNU6V Gene

No Data Available

Interacting Proteins for RNU6V Gene

Gene Ontology (GO) - Biological Process for RNU6V Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6V Gene

Transcripts for RNU6V Gene

mRNA/cDNA for RNU6V Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6V Gene

No ASD Table

Relevant External Links for RNU6V Gene

GeneLoc Exon Structure for
RNU6V
ECgene alternative splicing isoforms for
RNU6V

Expression for RNU6V Gene

mRNA expression in normal human tissues for RNU6V Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6V Gene:

RNU6V
genes like me logo Genes that share expression patterns with RNU6V: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6V Gene

Orthologs for RNU6V Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6V Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24267 35
  • 93 (a)
ManyToMany
Gm26166 35
  • 89 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 92 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35 35 35
  • 90 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 80 (a)
OneToOne
Species where no ortholog for RNU6V was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6V Gene

ENSEMBL:
Gene Tree for RNU6V (if available)
TreeFam:
Gene Tree for RNU6V (if available)

Paralogs for RNU6V Gene

No data available for Paralogs for RNU6V Gene

Variants for RNU6V Gene

Relevant External Links for RNU6V Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6V

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6V Gene

Disorders for RNU6V Gene

No disorders were found for RNU6V Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6V Gene

Publications for RNU6V Gene

  1. A U6 snRNA gene with an internal promoter is juxtaposed to an snRNP protein sequence within an intron of a human G protein gene. (PMID: 1829158) Wieben E.D. … Stanford D.R. (Nucleic Acids Res. 1991) 2 3 64

Products for RNU6V Gene

Sources for RNU6V Gene

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