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Aliases for RNU6ATAC8P Gene

Subcategory (RNA class) for RNU6ATAC8P Gene

snRNA

Aliases for RNU6ATAC8P Gene

  • RNA, U6atac Small Nuclear 8, Pseudogene 2 3 5

External Ids for RNU6ATAC8P Gene

ORGUL Members for RNU6ATAC8P Gene

Previous GeneCards Identifiers for RNU6ATAC8P Gene

  • GC08P103436

Summaries for RNU6ATAC8P Gene

GeneCards Summary for RNU6ATAC8P Gene

RNU6ATAC8P (RNA, U6atac Small Nuclear 8, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC8P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

View fRNAdb secondary structures for RNU6ATAC8P

Additional gene information for RNU6ATAC8P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC8P Gene

Genomics for RNU6ATAC8P Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC8P Gene

Promoters and enhancers for RNU6ATAC8P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I102582 Enhancer 1.5 FANTOM5 Ensembl ENCODE 11 +163.4 163375 4 HDGF FOXA2 SIN3A ZBTB7B IRF4 YY1 ZNF766 ZNF143 DEK JUNB LOC107986898 RNU6-1224P RNU6ATAC8P ODF1 UBR5-AS1 CTHRC1 KLF10 UBR5 LOC105375684 GC08M102622
GH08I102567 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.9 +147.3 147287 1.7 HDGF PKNOX1 ATF1 YBX1 IRF4 ZNF766 ZNF207 FOS ATF7 RUNX3 KLF10 RNU6-1224P LOC107986898 RNU6ATAC8P LOC105375683 UBR5 ATP6V1C1 AZIN1 LOC105375684 GC08M102622
GH08I102534 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10.8 +115.3 115335 4.7 HDGF PKNOX1 SMAD1 SIN3A IRF4 BRCA1 ETS1 ZNF143 ATF7 FOS UBR5 RNU6ATAC8P ENSG00000272037 LOC107986898 RNU6-1224P ODF1
GH08I102382 Enhancer 0.8 Ensembl ENCODE 11.8 -37.9 -37905 1.4 IRF2 ZSCAN4 YBX1 CDC5L ATF2 ATF4 PRDM6 IKZF1 VEZF1 ATF7 LOC105375683 UBR5 RNU6ATAC8P RRM2B UBR5-AS1 ENSG00000272037
GH08I102400 Enhancer 0.8 ENCODE 11.4 -20.6 -20629 0.1 FOXA2 MLX ARID4B THRB RAD21 RARA YY1 SLC30A9 THAP11 MIXL1 RNU6ATAC8P LOC107986898 RNU6-1224P UBR5 ENSG00000272037
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC8P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC8P Gene

Genomic Locations for RNU6ATAC8P Gene
chr8:102,421,197-102,421,322
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr8:103,433,425-103,433,550
(GRCh37/hg19)

Genomic View for RNU6ATAC8P Gene

Genes around RNU6ATAC8P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC8P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC8P Gene

ORGUL Member Location for RNU6ATAC8P Gene

ORGUL Member Location for RNU6ATAC8P gene

Proteins for RNU6ATAC8P Gene

Post-translational modifications for RNU6ATAC8P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC8P Gene

Domains & Families for RNU6ATAC8P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC8P Gene

Function for RNU6ATAC8P Gene

Phenotypes From GWAS Catalog for RNU6ATAC8P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC8P Gene

Localization for RNU6ATAC8P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC8P Gene

Pathways & Interactions for RNU6ATAC8P Gene

SuperPathways for RNU6ATAC8P Gene

No Data Available

Interacting Proteins for RNU6ATAC8P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC8P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC8P Gene

Drugs & Compounds for RNU6ATAC8P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC8P Gene

fRNAdb Secondary structures for RNU6ATAC8P Gene

  • RF00619;U6atac;DAAB012505516.1/79-1

mRNA/cDNA for RNU6ATAC8P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC8P Gene

No ASD Table

Relevant External Links for RNU6ATAC8P Gene

GeneLoc Exon Structure for
RNU6ATAC8P
ECgene alternative splicing isoforms for
RNU6ATAC8P

Expression for RNU6ATAC8P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC8P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC8P Gene:

RNU6ATAC8P
genes like me logo Genes that share expression patterns with RNU6ATAC8P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC8P Gene

Orthologs for RNU6ATAC8P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC8P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34
  • 83 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 77 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6atac 34
  • 72 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26249 34
  • 70 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 61 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 67 (a)
OneToMany
Species where no ortholog for RNU6ATAC8P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC8P Gene

ENSEMBL:
Gene Tree for RNU6ATAC8P (if available)
TreeFam:
Gene Tree for RNU6ATAC8P (if available)

Paralogs for RNU6ATAC8P Gene

No data available for Paralogs for RNU6ATAC8P Gene

Variants for RNU6ATAC8P Gene

Additional Variant Information for RNU6ATAC8P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC8P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC8P Gene

Disorders for RNU6ATAC8P Gene

No disorders were found for RNU6ATAC8P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC8P Gene

Publications for RNU6ATAC8P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla GC … Padgett RA (RNA (New York, N.Y.) 1999) 1

Products for RNU6ATAC8P Gene

Sources for RNU6ATAC8P Gene

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