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Aliases for RNU6ATAC7P Gene

Subcategory (RNA class) for RNU6ATAC7P Gene

snRNA

Aliases for RNU6ATAC7P Gene

  • RNA, U6atac Small Nuclear 7, Pseudogene 2 3 5

External Ids for RNU6ATAC7P Gene

ORGUL Members for RNU6ATAC7P Gene

Previous GeneCards Identifiers for RNU6ATAC7P Gene

  • GC17M029893
  • GC17M029896

Summaries for RNU6ATAC7P Gene

GeneCards Summary for RNU6ATAC7P Gene

RNU6ATAC7P (RNA, U6atac Small Nuclear 7, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6ATAC7P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC7P Gene

Genomics for RNU6ATAC7P Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC7P Gene

Promoters and enhancers for RNU6ATAC7P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I031592 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -32.4 -32385 6.7 FOXA2 SIN3A ZNF48 RAD21 RCOR1 ATF7 FOS IKZF2 USF2 KAT8 RAB11FIP4 MIR193A RNU6ATAC7P RNF135 CRLF3 EVI2A ENSG00000266877 GC17M031638 PIR51917
GH17I031537 Enhancer 0.9 ENCODE dbSUPER 11.3 +26.0 26002 0.9 PKNOX1 EBF1 ZIC2 IRF4 FOXK2 POLR2A IKZF2 RUNX3 ZNF687 CBFB RAB11FIP4 MIR193A RNU6ATAC7P GC17P031541 MIR4724 GC17P031509
GH17I031535 Enhancer 0.8 ENCODE dbSUPER 11.3 +28.0 28006 0.2 HDGF SMARCA5 PKNOX1 ELF1 DPF2 IKZF1 NBN ETV6 RUNX3 IKZF2 ENSG00000278977 MIR4724 RAB11FIP4 MIR193A RNU6ATAC7P GC17P031541 GC17P031509
GH17I031586 Enhancer 0.7 ENCODE dbSUPER 12.2 -23.6 -23617 2.4 MITF ZNF335 ATF4 USF1 CEBPG BCL6 RNU6ATAC7P MIR193A UTP6 RAB11FIP4 SH3GL1P1 ENSG00000266877 GC17M031638 PIR51917
GH17I031540 Enhancer 0.6 dbSUPER 12.2 +22.5 22502 1.8 CTCF NFIA EBF1 ZBTB8A ZIC2 RAD21 NFIC ZNF548 GC17P031541 UTP6 RAB11FIP4 ZNF207 SUZ12 TEFM RNU6ATAC7P ENSG00000264456 DPRXP4 ATAD5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC7P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC7P Gene

Genomic Locations for RNU6ATAC7P Gene
chr17:31,563,768-31,563,894
(GRCh38/hg38)
Size:
127 bases
Orientation:
Minus strand
chr17:29,890,787-29,890,913
(GRCh37/hg19)

Genomic View for RNU6ATAC7P Gene

Genes around RNU6ATAC7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC7P Gene

Proteins for RNU6ATAC7P Gene

Post-translational modifications for RNU6ATAC7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC7P Gene

Domains & Families for RNU6ATAC7P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC7P Gene

Function for RNU6ATAC7P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC7P Gene

Localization for RNU6ATAC7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC7P Gene

Pathways & Interactions for RNU6ATAC7P Gene

SuperPathways for RNU6ATAC7P Gene

No Data Available

Interacting Proteins for RNU6ATAC7P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC7P Gene

Drugs & Compounds for RNU6ATAC7P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC7P Gene

mRNA/cDNA for RNU6ATAC7P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC7P Gene

No ASD Table

Relevant External Links for RNU6ATAC7P Gene

GeneLoc Exon Structure for
RNU6ATAC7P
ECgene alternative splicing isoforms for
RNU6ATAC7P

Expression for RNU6ATAC7P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC7P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC7P Gene:

RNU6ATAC7P
genes like me logo Genes that share expression patterns with RNU6ATAC7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC7P Gene

Orthologs for RNU6ATAC7P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC7P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 83 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6atac 34
  • 77 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6atac 34
  • 74 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 72 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 70 (a)
OneToMany
Species where no ortholog for RNU6ATAC7P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC7P Gene

ENSEMBL:
Gene Tree for RNU6ATAC7P (if available)
TreeFam:
Gene Tree for RNU6ATAC7P (if available)

Paralogs for RNU6ATAC7P Gene

No data available for Paralogs for RNU6ATAC7P Gene

Variants for RNU6ATAC7P Gene

Additional Variant Information for RNU6ATAC7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC7P Gene

Disorders for RNU6ATAC7P Gene

No disorders were found for RNU6ATAC7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC7P Gene

Publications for RNU6ATAC7P Gene

No publications were found for RNU6ATAC7P Gene.

Products for RNU6ATAC7P Gene

Sources for RNU6ATAC7P Gene

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