Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6ATAC4P Gene

Subcategory (RNA class) for RNU6ATAC4P Gene

snRNA

Aliases for RNU6ATAC4P Gene

  • RNA, U6atac Small Nuclear 4, Pseudogene 2 3 5
  • RNA, U6atac Small Nuclear 4 Pseudogene 2

External Ids for RNU6ATAC4P Gene

ORGUL Members for RNU6ATAC4P Gene

Previous GeneCards Identifiers for RNU6ATAC4P Gene

  • GC03U901062
  • GC03M037010

Summaries for RNU6ATAC4P Gene

GeneCards Summary for RNU6ATAC4P Gene

RNU6ATAC4P (RNA, U6atac Small Nuclear 4, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC4P Gene

Genomics for RNU6ATAC4P Gene

Regulatory Elements for RNU6ATAC4P Gene

Enhancers for RNU6ATAC4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G036874 1.5 Ensembl ENCODE dbSUPER 11.2 +91.5 91544 5.4 HDGF HNRNPUL1 FOXA2 PKNOX1 YY1 CBX5 FOS NCOA1 NFYC JUNB TRANK1 RNU6ATAC4P DCLK3 ENSG00000234073 LRRFIP2 ENSG00000281100
GH03G036900 1.3 FANTOM5 ENCODE dbSUPER 11.7 +67.0 67049 1.8 PKNOX1 ZMYM3 ZNF384 GATA2 ADNP NR2F6 HES1 EZH2 SMARCE1 MTA2 TRANK1 RNU6ATAC4P EPM2AIP1 MLH1 ENSG00000234073 GOLGA4 GC03M036882 GC03P036930
GH03G036957 1.7 FANTOM5 Ensembl ENCODE 0.4 +10.1 10105 2.0 HDGF PKNOX1 ARNT ARID4B YY1 ZNF766 CBX5 ZNF143 FOS JUNB LRRFIP2 EPM2AIP1 RPL29P11 MLH1 RNU6ATAC4P GC03M036968 GC03P036930
GH03G036965 0.7 ENCODE 0.7 +2.6 2648 1.0 PKNOX1 TEAD4 DPF2 ZBTB40 ZBTB7B SREBF1 ZNF579 CTBP1 RAD51 GATA3 LRRFIP2 MLH1 GC03M036968 RNU6ATAC4P GC03P036930
GH03G036932 1.3 Ensembl ENCODE dbSUPER 0.3 +35.0 34982 1.9 FOXA2 YY1 ZNF766 ZBTB11 ZEB2 CREB3 MTA1 SMARCA4 CEBPA NR2C1 LRRFIP2 GC03P036930 RNU6ATAC4P GC03M036968
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC4P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC4P Gene

Chromosome:
3
Start:
36,968,191 bp from pter
End:
36,968,316 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC4P Gene

Genes around RNU6ATAC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC4P Gene

Proteins for RNU6ATAC4P Gene

Post-translational modifications for RNU6ATAC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC4P Gene

Domains & Families for RNU6ATAC4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC4P Gene

Function for RNU6ATAC4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC4P Gene

Localization for RNU6ATAC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC4P Gene

Pathways & Interactions for RNU6ATAC4P Gene

SuperPathways for RNU6ATAC4P Gene

No Data Available

Interacting Proteins for RNU6ATAC4P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC4P Gene

Drugs & Compounds for RNU6ATAC4P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC4P Gene

mRNA/cDNA for RNU6ATAC4P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC4P Gene

No ASD Table

Relevant External Links for RNU6ATAC4P Gene

GeneLoc Exon Structure for
RNU6ATAC4P
ECgene alternative splicing isoforms for
RNU6ATAC4P

Expression for RNU6ATAC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC4P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC4P Gene:

RNU6ATAC4P
genes like me logo Genes that share expression patterns with RNU6ATAC4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC4P Gene

Orthologs for RNU6ATAC4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 80 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 67 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 67 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 70 (a)
OneToMany
Species where no ortholog for RNU6ATAC4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC4P Gene

ENSEMBL:
Gene Tree for RNU6ATAC4P (if available)
TreeFam:
Gene Tree for RNU6ATAC4P (if available)

Paralogs for RNU6ATAC4P Gene

No data available for Paralogs for RNU6ATAC4P Gene

Variants for RNU6ATAC4P Gene

Relevant External Links for RNU6ATAC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC4P Gene

Disorders for RNU6ATAC4P Gene

No disorders were found for RNU6ATAC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC4P Gene

Publications for RNU6ATAC4P Gene

No publications were found for RNU6ATAC4P Gene.

Products for RNU6ATAC4P Gene

Sources for RNU6ATAC4P Gene

Content
Loading form....