Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6ATAC42P Gene

Subcategory (RNA class) for RNU6ATAC42P Gene

snRNA

Aliases for RNU6ATAC42P Gene

  • RNA, U6atac Small Nuclear 42, Pseudogene 2 3 5

External Ids for RNU6ATAC42P Gene

ORGUL Members for RNU6ATAC42P Gene

Previous GeneCards Identifiers for RNU6ATAC42P Gene

  • GC12P065335

Summaries for RNU6ATAC42P Gene

GeneCards Summary for RNU6ATAC42P Gene

RNU6ATAC42P (RNA, U6atac Small Nuclear 42, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC42P Gene

Genomics for RNU6ATAC42P Gene

Regulatory Elements for RNU6ATAC42P Gene

Enhancers for RNU6ATAC42P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F064900 0.6 ENCODE 11.6 -38.2 -38153 0.9 PKNOX1 BHLHE40 CUX1 FOS WIF1 RNU6-166P RNU6ATAC42P FLJ41278 GC12P064940
GH12F064895 0.5 ENCODE 11.5 -43.4 -43362 1.1 GATA3 ZNF146 JUNB CUX1 FOS GABPA WIF1 RNU6-166P RNU6ATAC42P FLJ41278 GC12P064940
GH12F064943 0.8 ENCODE 0.8 +5.0 4961 1.6 SMARCA4 RNF2 SCRT2 HLF WIF1 FLJ41278 RNU6ATAC42P ENSG00000248995
GH12F064946 0.9 Ensembl ENCODE 0.4 +7.5 7451 0.8 NR2F2 RNU6ATAC42P ENSG00000248995
GH12F064944 0.4 ENCODE 0.4 +6.2 6159 0.5 CTCF SMARCA4 POLR2A RNU6ATAC42P ENSG00000248995
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC42P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC42P Gene

Chromosome:
12
Start:
64,939,023 bp from pter
End:
64,939,117 bp from pter
Size:
95 bases
Orientation:
Plus strand

Genomic View for RNU6ATAC42P Gene

Genes around RNU6ATAC42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC42P Gene

Proteins for RNU6ATAC42P Gene

Post-translational modifications for RNU6ATAC42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC42P Gene

Domains & Families for RNU6ATAC42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC42P Gene

Function for RNU6ATAC42P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC42P Gene

Localization for RNU6ATAC42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC42P Gene

Pathways & Interactions for RNU6ATAC42P Gene

SuperPathways for RNU6ATAC42P Gene

No Data Available

Interacting Proteins for RNU6ATAC42P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC42P Gene

Transcripts for RNU6ATAC42P Gene

mRNA/cDNA for RNU6ATAC42P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC42P Gene

No ASD Table

Relevant External Links for RNU6ATAC42P Gene

GeneLoc Exon Structure for
RNU6ATAC42P
ECgene alternative splicing isoforms for
RNU6ATAC42P

Expression for RNU6ATAC42P Gene

mRNA expression in normal human tissues for RNU6ATAC42P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC42P Gene:

RNU6ATAC42P
genes like me logo Genes that share expression patterns with RNU6ATAC42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC42P Gene

Orthologs for RNU6ATAC42P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC42P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 53 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 52 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6atac 35
  • 49 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23336 35
  • 49 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 35
  • 45 (a)
OneToMany
Species where no ortholog for RNU6ATAC42P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC42P Gene

ENSEMBL:
Gene Tree for RNU6ATAC42P (if available)
TreeFam:
Gene Tree for RNU6ATAC42P (if available)

Paralogs for RNU6ATAC42P Gene

No data available for Paralogs for RNU6ATAC42P Gene

Variants for RNU6ATAC42P Gene

Relevant External Links for RNU6ATAC42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC42P Gene

Disorders for RNU6ATAC42P Gene

No disorders were found for RNU6ATAC42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC42P Gene

Publications for RNU6ATAC42P Gene

No publications were found for RNU6ATAC42P Gene.

Products for RNU6ATAC42P Gene

Sources for RNU6ATAC42P Gene

Content
Loading form....