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Aliases for RNU6ATAC41P Gene

Subcategory (RNA class) for RNU6ATAC41P Gene

snRNA

Aliases for RNU6ATAC41P Gene

  • RNA, U6atac Small Nuclear 41, Pseudogene 2 3 5

External Ids for RNU6ATAC41P Gene

ORGUL Members for RNU6ATAC41P Gene

Previous GeneCards Identifiers for RNU6ATAC41P Gene

  • GC08M101754

Summaries for RNU6ATAC41P Gene

GeneCards Summary for RNU6ATAC41P Gene

RNU6ATAC41P (RNA, U6atac Small Nuclear 41, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC41P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

View fRNAdb secondary structures for RNU6ATAC41P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC41P Gene

Genomics for RNU6ATAC41P Gene

Regulatory Elements for RNU6ATAC41P Gene

Enhancers for RNU6ATAC41P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F100748 0.5 ENCODE 0.4 -8.3 -8301 0.2 CTCF PKNOX1 SIN3A ZIC2 RAD21 E2F1 GATA3 CTBP1 NCOR1 POLR2A ENSG00000202001 GC08M100756 RNU6ATAC41P
GH08F100745 1 ENCODE 0.4 -6.5 -6494 1.1 PKNOX1 SIN3A RAD21 ZNF207 RCOR1 FOS CEBPB ZEB2 GATAD2B ZNF217 PABPC1 MIR7705 POLR2K ENSG00000271882 SNX31 ENSG00000202001 GC08M100756 RNU6ATAC41P
GH08F100731 0.2 ENCODE 0.4 +8.5 8450 0.1 CEBPB PRDM1 RNU6ATAC41P LOC105375673
GH08F100750 0.9 ENCODE 0.4 -10.8 -10821 0.2 ENSG00000202001 GC08M100756 RNU6ATAC41P
GH08F100723 1 ENCODE 0.3 +15.5 15518 0.8 RFX1 PKNOX1 CEBPB CEBPG DPF2 ZKSCAN1 CEBPA ZNF207 ZBTB33 PRDM1 PABPC1 LOC105375673 RNU6ATAC41P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC41P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC41P Gene

Chromosome:
8
Start:
100,739,802 bp from pter
End:
100,739,927 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC41P Gene

Genes around RNU6ATAC41P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC41P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC41P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC41P Gene

ORGUL Member Location for RNU6ATAC41P Gene

ORGUL Member Location for RNU6ATAC41P gene

Proteins for RNU6ATAC41P Gene

Post-translational modifications for RNU6ATAC41P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC41P Gene

Domains & Families for RNU6ATAC41P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC41P Gene

Function for RNU6ATAC41P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC41P Gene

Localization for RNU6ATAC41P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC41P Gene

Pathways & Interactions for RNU6ATAC41P Gene

SuperPathways for RNU6ATAC41P Gene

No Data Available

Interacting Proteins for RNU6ATAC41P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC41P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC41P Gene

Transcripts for RNU6ATAC41P Gene

fRNAdb Secondary structures for RNU6ATAC41P Gene

  • RF00619;U6atac;ADDF011241011.1/294-398

mRNA/cDNA for RNU6ATAC41P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC41P Gene

No ASD Table

Relevant External Links for RNU6ATAC41P Gene

GeneLoc Exon Structure for
RNU6ATAC41P
ECgene alternative splicing isoforms for
RNU6ATAC41P

Expression for RNU6ATAC41P Gene

mRNA expression in normal human tissues for RNU6ATAC41P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC41P Gene:

RNU6ATAC41P
genes like me logo Genes that share expression patterns with RNU6ATAC41P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC41P Gene

Orthologs for RNU6ATAC41P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC41P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35 35
  • 79 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35 35 35 35 35 35
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23226 35
  • 67 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 63 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 60 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6atac 35
  • 59 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 35
  • 64 (a)
OneToMany
Species where no ortholog for RNU6ATAC41P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC41P Gene

ENSEMBL:
Gene Tree for RNU6ATAC41P (if available)
TreeFam:
Gene Tree for RNU6ATAC41P (if available)

Paralogs for RNU6ATAC41P Gene

No data available for Paralogs for RNU6ATAC41P Gene

Variants for RNU6ATAC41P Gene

Relevant External Links for RNU6ATAC41P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC41P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC41P Gene

Disorders for RNU6ATAC41P Gene

No disorders were found for RNU6ATAC41P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC41P Gene

Publications for RNU6ATAC41P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic Z.J. … Barta A. (RNA 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett R.A. … Shukla G.C. (RNA 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla G.C. … Padgett R.A. (RNA 1999) 1

Products for RNU6ATAC41P Gene

Sources for RNU6ATAC41P Gene

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