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Aliases for RNU6ATAC39P Gene

Aliases for RNU6ATAC39P Gene

  • RNA, U6atac Small Nuclear 39, Pseudogene 2 3 5

External Ids for RNU6ATAC39P Gene

Previous GeneCards Identifiers for RNU6ATAC39P Gene

  • GC10P012499

Summaries for RNU6ATAC39P Gene

GeneCards Summary for RNU6ATAC39P Gene

RNU6ATAC39P (RNA, U6atac Small Nuclear 39, Pseudogene) is a Pseudogene.

Additional gene information for RNU6ATAC39P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC39P Gene

Genomics for RNU6ATAC39P Gene

Regulatory Elements for RNU6ATAC39P Gene

Enhancers for RNU6ATAC39P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H012483 1.3 FANTOM5 Ensembl ENCODE 11.8 +28.5 28493 2.4 HDGF CTCF RB1 ETV1 MAX SIN3A EBF1 RAD21 RELA POLR2A CAMK1D RNU6ATAC39P ENSG00000228302 MIR548Q GC10P012490 GC10P012491
GH10H012447 1.7 FANTOM5 Ensembl ENCODE 0.4 -7.6 -7591 2 ATF1 FEZF1 ZNF2 ELK1 FOS ATF7 RUNX3 SP3 JUNB TSHZ1 UPF2 CAMK1D ENSG00000228302 ENSG00000252438 BTBD7P1 SEC61A2 GC10M012437 RNU6ATAC39P
GH10H012455 0.9 FANTOM5 ENCODE 0.7 -0.4 -402 0.7 OSR2 KLF1 JUND MAX NR2F6 NR2F2 TRIM28 RNU6ATAC39P GC10M012437
GH10H012444 1 ENCODE 0.4 -10.8 -10816 1.6 PKNOX1 FEZF1 YY1 KLF7 ATF7 RUNX3 CAVIN1 JUNB TSHZ1 ZNF488 SEPHS1 UPF2 ENSG00000252438 CAMK1D ENSG00000228302 GC10M012437 RNU6ATAC39P
GH10H012481 0.9 Ensembl ENCODE 0.3 +26.1 26057 1.3 PKNOX1 ZNF687 REST POLR2A IKZF1 ZSCAN5C POU5F1 ZNF600 IKZF2 PRDM1 CAMK1D ENSG00000228302 MIR548Q GC10P012491 GC10P012490 RNU6ATAC39P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC39P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC39P Gene

Genomic Locations for RNU6ATAC39P Gene
chr10:12,456,483-12,456,631
(GRCh38/hg38)
Size:
149 bases
Orientation:
Plus strand
chr10:12,498,482-12,498,630
(GRCh37/hg19)

Genomic View for RNU6ATAC39P Gene

Genes around RNU6ATAC39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC39P Gene

Proteins for RNU6ATAC39P Gene

Post-translational modifications for RNU6ATAC39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC39P Gene

Domains & Families for RNU6ATAC39P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC39P Gene

Function for RNU6ATAC39P Gene

Phenotypes From GWAS Catalog for RNU6ATAC39P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC39P Gene

Localization for RNU6ATAC39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC39P Gene

Pathways & Interactions for RNU6ATAC39P Gene

SuperPathways for RNU6ATAC39P Gene

No Data Available

Interacting Proteins for RNU6ATAC39P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC39P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC39P Gene

Drugs & Compounds for RNU6ATAC39P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC39P Gene

mRNA/cDNA for RNU6ATAC39P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC39P Gene

No ASD Table

Relevant External Links for RNU6ATAC39P Gene

GeneLoc Exon Structure for
RNU6ATAC39P
ECgene alternative splicing isoforms for
RNU6ATAC39P

Expression for RNU6ATAC39P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC39P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC39P Gene:

RNU6ATAC39P
genes like me logo Genes that share expression patterns with RNU6ATAC39P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC39P Gene

Orthologs for RNU6ATAC39P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC39P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 34
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 62 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 55 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 55 (a)
OneToMany
Species where no ortholog for RNU6ATAC39P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC39P Gene

ENSEMBL:
Gene Tree for RNU6ATAC39P (if available)
TreeFam:
Gene Tree for RNU6ATAC39P (if available)

Paralogs for RNU6ATAC39P Gene

No data available for Paralogs for RNU6ATAC39P Gene

Variants for RNU6ATAC39P Gene

Relevant External Links for RNU6ATAC39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC39P Gene

Disorders for RNU6ATAC39P Gene

No disorders were found for RNU6ATAC39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC39P Gene

Publications for RNU6ATAC39P Gene

No publications were found for RNU6ATAC39P Gene.

Products for RNU6ATAC39P Gene

Sources for RNU6ATAC39P Gene

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