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Aliases for RNU6ATAC33P Gene

Subcategory (RNA class) for RNU6ATAC33P Gene

snRNA

Aliases for RNU6ATAC33P Gene

  • RNA, U6atac Small Nuclear 33, Pseudogene 2 3 5

External Ids for RNU6ATAC33P Gene

ORGUL Members for RNU6ATAC33P Gene

Summaries for RNU6ATAC33P Gene

GeneCards Summary for RNU6ATAC33P Gene

RNU6ATAC33P (RNA, U6atac Small Nuclear 33, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6ATAC33P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC33P Gene

Genomics for RNU6ATAC33P Gene

Regulatory Elements for RNU6ATAC33P Gene

Enhancers for RNU6ATAC33P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H010392 0.9 Ensembl ENCODE 0.7 +4.8 4771 4 FOXA2 SIN3A FOXA1 ZNF217 E2F1 RAD51 JUND GATA3 POLR2A CREB1 AMPD3 RNU6ATAC33P GC11M010399 PIR60970
GH11H010366 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +32.4 32407 1 HDGF ATF1 ARNT ARID4B SIN3A DMAP1 YY1 ETS1 ZNF143 RUNX3 ZBED5 CTR9 RPL21P97 WEE1 ADM AMPD3 LOC105376544 ENSG00000238387 EIF4G2 GC11M010399
GH11H010385 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.8 11751 3 ZFHX2 GATA3 RFX1 RCOR1 DPF2 NR2F2 MTRNR2L8 LYVE1 MRVI1 AMPD3 RNU6ATAC33P GC11M010399 PIR60970
GH11H010413 1.3 FANTOM5 Ensembl ENCODE 0.4 -15.3 -15250 2 CTCF MAFG REST RAD21 CC2D1A CTBP1 ZNF316 SMC3 NFE2 RUNX3 AMPD3 CTR9 MRVI1-AS1 RNF141 LYVE1 MRVI1 SBF2 EIF4G2 ZBED5 ADM
GH11H010405 1.2 Ensembl ENCODE 0.4 -7.9 -7855 2 PKNOX1 FOXA2 TCF12 ZNF143 FOS ATF7 DEK REST ZNF592 NFIL3 AMPD3 WEE1 RNU6ATAC33P GC11M010399 GC11P010430
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC33P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC33P Gene

Chromosome:
11
Start:
10,399,192 bp from pter
End:
10,399,317 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC33P Gene

Genes around RNU6ATAC33P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC33P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC33P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC33P Gene

Proteins for RNU6ATAC33P Gene

Post-translational modifications for RNU6ATAC33P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC33P Gene

Domains & Families for RNU6ATAC33P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC33P Gene

Function for RNU6ATAC33P Gene

Phenotypes From GWAS Catalog for RNU6ATAC33P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC33P Gene

Localization for RNU6ATAC33P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC33P Gene

Pathways & Interactions for RNU6ATAC33P Gene

SuperPathways for RNU6ATAC33P Gene

No Data Available

Interacting Proteins for RNU6ATAC33P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC33P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC33P Gene

Drugs & Compounds for RNU6ATAC33P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC33P Gene

mRNA/cDNA for RNU6ATAC33P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC33P Gene

No ASD Table

Relevant External Links for RNU6ATAC33P Gene

GeneLoc Exon Structure for
RNU6ATAC33P
ECgene alternative splicing isoforms for
RNU6ATAC33P

Expression for RNU6ATAC33P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC33P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC33P Gene:

RNU6ATAC33P
genes like me logo Genes that share expression patterns with RNU6ATAC33P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC33P Gene

Orthologs for RNU6ATAC33P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC33P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 34
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6atac 34
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 58 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 67 (a)
OneToMany
Species where no ortholog for RNU6ATAC33P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC33P Gene

ENSEMBL:
Gene Tree for RNU6ATAC33P (if available)
TreeFam:
Gene Tree for RNU6ATAC33P (if available)

Paralogs for RNU6ATAC33P Gene

No data available for Paralogs for RNU6ATAC33P Gene

Variants for RNU6ATAC33P Gene

Relevant External Links for RNU6ATAC33P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC33P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC33P Gene

Disorders for RNU6ATAC33P Gene

No disorders were found for RNU6ATAC33P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC33P Gene

Publications for RNU6ATAC33P Gene

No publications were found for RNU6ATAC33P Gene.

Products for RNU6ATAC33P Gene

Sources for RNU6ATAC33P Gene

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