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Aliases for RNU6ATAC33P Gene

Subcategory (RNA class) for RNU6ATAC33P Gene

snRNA

Aliases for RNU6ATAC33P Gene

  • RNA, U6atac Small Nuclear 33, Pseudogene 2 3 5

External Ids for RNU6ATAC33P Gene

ORGUL Members for RNU6ATAC33P Gene

Summaries for RNU6ATAC33P Gene

GeneCards Summary for RNU6ATAC33P Gene

RNU6ATAC33P (RNA, U6atac Small Nuclear 33, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC33P Gene

Genomics for RNU6ATAC33P Gene

Regulatory Elements for RNU6ATAC33P Gene

Enhancers for RNU6ATAC33P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F010392 1 Ensembl ENCODE 0.8 +4.8 4771 4.5 CTCF RAD21 E2F1 ZNF316 GATA3 CTBP1 FOS NFE2 MAFK TCF7L2 AMPD3 GC11M010399 RNU6ATAC33P PIR60970
GH11F010398 0.8 Ensembl ENCODE 0.8 +0.8 817 1.0 ZNF146 ESRRA BHLHE40 MAX MYC GC11M010399 RNU6ATAC33P PIR60970
GH11F010385 1.4 FANTOM5 Ensembl ENCODE 0.4 +11.8 11751 3.9 HDAC1 PKNOX1 TBL1XR1 SIN3A RARA FOS USF2 CEBPB ZEB2 NR2F2 MIR4485 MTRNR2L8 LYVE1 MRVI1 AMPD3 GC11M010399 RNU6ATAC33P PIR60970
GH11F010405 1.2 Ensembl ENCODE 0.4 -7.9 -7855 2.7 ELF3 TBP HDAC1 PKNOX1 TBL1XR1 SIN3A RAD21 RFX5 CHAMP1 FOS ZBED5 ZNF143 AMPD3 WEE1 GC11M010399 RNU6ATAC33P GC11P010430
GH11F010366 1.6 FANTOM5 Ensembl ENCODE 0.3 +32.4 32407 1.7 ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 ZNF143 DEK ZNF263 MCM3 ZBED5 ADM CTR9 RPL21P97 AMPD3 LOC105376544 RNU6ATAC33P GC11M010399 PIR60970
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC33P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC33P Gene

Chromosome:
11
Start:
10,399,192 bp from pter
End:
10,399,317 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC33P Gene

Genes around RNU6ATAC33P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC33P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC33P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC33P Gene

Proteins for RNU6ATAC33P Gene

Post-translational modifications for RNU6ATAC33P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC33P Gene

Domains & Families for RNU6ATAC33P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC33P Gene

Function for RNU6ATAC33P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC33P Gene

Localization for RNU6ATAC33P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC33P Gene

Pathways & Interactions for RNU6ATAC33P Gene

SuperPathways for RNU6ATAC33P Gene

No Data Available

Interacting Proteins for RNU6ATAC33P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC33P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC33P Gene

Transcripts for RNU6ATAC33P Gene

mRNA/cDNA for RNU6ATAC33P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC33P Gene

No ASD Table

Relevant External Links for RNU6ATAC33P Gene

GeneLoc Exon Structure for
RNU6ATAC33P
ECgene alternative splicing isoforms for
RNU6ATAC33P

Expression for RNU6ATAC33P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6ATAC33P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC33P Gene:

RNU6ATAC33P
genes like me logo Genes that share expression patterns with RNU6ATAC33P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC33P Gene

Orthologs for RNU6ATAC33P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC33P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6atac 35
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 58 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 67 (a)
OneToMany
Species where no ortholog for RNU6ATAC33P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC33P Gene

ENSEMBL:
Gene Tree for RNU6ATAC33P (if available)
TreeFam:
Gene Tree for RNU6ATAC33P (if available)

Paralogs for RNU6ATAC33P Gene

No data available for Paralogs for RNU6ATAC33P Gene

Variants for RNU6ATAC33P Gene

Relevant External Links for RNU6ATAC33P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC33P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC33P Gene

Disorders for RNU6ATAC33P Gene

No disorders were found for RNU6ATAC33P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC33P Gene

Publications for RNU6ATAC33P Gene

No publications were found for RNU6ATAC33P Gene.

Products for RNU6ATAC33P Gene

Sources for RNU6ATAC33P Gene

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