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Aliases for RNU6ATAC32P Gene

Subcategory (RNA class) for RNU6ATAC32P Gene


Aliases for RNU6ATAC32P Gene

  • RNA, U6atac Small Nuclear 32, Pseudogene 2 3 5

External Ids for RNU6ATAC32P Gene

ORGUL Members for RNU6ATAC32P Gene

Previous GeneCards Identifiers for RNU6ATAC32P Gene

  • GC08M055067

Summaries for RNU6ATAC32P Gene

GeneCards Summary for RNU6ATAC32P Gene

RNU6ATAC32P (RNA, U6atac Small Nuclear 32, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC32P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

View fRNAdb secondary structures for RNU6ATAC32P

Additional gene information for RNU6ATAC32P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC32P Gene

Genomics for RNU6ATAC32P Gene

Regulatory Elements for RNU6ATAC32P Gene

Enhancers for RNU6ATAC32P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H054165 1.4 Ensembl ENCODE dbSUPER 0.4 -13.0 -13039 0 HDAC1 ATF1 ARID4B SIN3A RAD21 ZNF766 ZNF143 IKZF2 ZNF654 CEBPB MRPL15 SOX17 ATP6V1H TCEA1 RNU6ATAC32P GC08M054193
GH08H054169 1.2 Ensembl ENCODE dbSUPER 0.4 -17.1 -17119 1 CTCF RB1 GTF2E2 CEBPG RAD21 GTF3C2 POLR2A ZNF143 SMC3 ZNF654 LOC100131254 MRPL15 SOX17 ATP6V1H CHCHD2P10 RNU6ATAC32P GC08M054193
GH08H054134 1.1 ENCODE 0.4 +17.1 17112 3 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 LOC100131254 TCEA1 MRPL15 RNU6ATAC32P
GH08H054171 0.9 Ensembl ENCODE 0.4 -19.1 -19063 1 ESRRA CEBPB EP300 RAD21 JUND POLR2A CEBPA SMC3 HNF4A FOS MRPL15 CHCHD2P10 RNU6ATAC32P GC08M054193
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC32P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC32P Gene

54,152,807 bp from pter
54,152,882 bp from pter
76 bases
Minus strand

Genomic View for RNU6ATAC32P Gene

Genes around RNU6ATAC32P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC32P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC32P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC32P Gene

ORGUL Member Location for RNU6ATAC32P Gene

ORGUL Member Location for RNU6ATAC32P gene

Proteins for RNU6ATAC32P Gene

Post-translational modifications for RNU6ATAC32P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC32P Gene

Domains & Families for RNU6ATAC32P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC32P Gene

Function for RNU6ATAC32P Gene

Phenotypes From GWAS Catalog for RNU6ATAC32P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC32P Gene

Localization for RNU6ATAC32P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC32P Gene

Pathways & Interactions for RNU6ATAC32P Gene

SuperPathways for RNU6ATAC32P Gene

No Data Available

Interacting Proteins for RNU6ATAC32P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC32P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC32P Gene

Drugs & Compounds for RNU6ATAC32P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC32P Gene

fRNAdb Secondary structures for RNU6ATAC32P Gene

  • RF00619;U6atac;AC060764.13/65042-65117

mRNA/cDNA for RNU6ATAC32P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC32P Gene

No ASD Table

Relevant External Links for RNU6ATAC32P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6ATAC32P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC32P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC32P Gene:

genes like me logo Genes that share expression patterns with RNU6ATAC32P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC32P Gene

Orthologs for RNU6ATAC32P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC32P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6atac 34
  • 62 (a)
(Monodelphis domestica)
Mammalia U6atac 34
  • 46 (a)
(Bos Taurus)
Mammalia U6atac 34
  • 44 (a)
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 36 (a)
(Canis familiaris)
Mammalia U6atac 34
  • 35 (a)
(Mus musculus)
Mammalia Gm25309 34
  • 34 (a)
(Anolis carolinensis)
Reptilia U6atac 34
  • 39 (a)
(Danio rerio)
Actinopterygii U6atac 34
  • 40 (a)
Species where no ortholog for RNU6ATAC32P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC32P Gene

Gene Tree for RNU6ATAC32P (if available)
Gene Tree for RNU6ATAC32P (if available)

Paralogs for RNU6ATAC32P Gene

No data available for Paralogs for RNU6ATAC32P Gene

Variants for RNU6ATAC32P Gene

Relevant External Links for RNU6ATAC32P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC32P Gene

Disorders for RNU6ATAC32P Gene

No disorders were found for RNU6ATAC32P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC32P Gene

Publications for RNU6ATAC32P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla GC … Padgett RA (RNA (New York, N.Y.) 1999) 1

Products for RNU6ATAC32P Gene

Sources for RNU6ATAC32P Gene

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