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Aliases for RNU6ATAC30P Gene

Subcategory (RNA class) for RNU6ATAC30P Gene

snRNA

Aliases for RNU6ATAC30P Gene

  • RNA, U6atac Small Nuclear 30, Pseudogene 2 3 5

External Ids for RNU6ATAC30P Gene

ORGUL Members for RNU6ATAC30P Gene

Previous GeneCards Identifiers for RNU6ATAC30P Gene

  • GC14P050154

Summaries for RNU6ATAC30P Gene

GeneCards Summary for RNU6ATAC30P Gene

RNU6ATAC30P (RNA, U6atac Small Nuclear 30, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC30P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC30P Gene

Genomics for RNU6ATAC30P Gene

Regulatory Elements for RNU6ATAC30P Gene

Enhancers for RNU6ATAC30P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F049766 1.4 FANTOM5 ENCODE 11.8 +84.8 84767 5.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 RPL36AL RNU6ATAC30P POLE2 KLHDC1 LRR1 KLHDC2 GC14M049783
GH14F049721 0.2 ENCODE 11.4 +37.2 37248 0.7 ELF3 TBP ATF1 ARID4B DMAP1 THRB ZNF48 ZSCAN9 RAD21 RARA POLE2 RNU6ATAC30P ENSG00000258400 GC14P049749
GH14F049632 0.2 ENCODE 11.2 -49.9 -49903 4.7 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 RPL36AL RNU6ATAC30P STK16P1 RHOQP1 DNAAF2 PIR31071
GH14F049631 0.2 ENCODE 11.2 -52.9 -52927 0.2 HDGF PKNOX1 MTA2 JUNB JUND CBX5 IKZF1 NBN ZNF600 RPL36AL RNU6ATAC30P ENSG00000258450 PIR31071
GH14F049618 1.2 FANTOM5 ENCODE 11.1 -62.4 -62359 6.4 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 RPL36AL LRR1 DNAAF2 RNU6ATAC30P VCPKMT RHOQP1 KLHDC2 NEMF ARF6 RPS29
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC30P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC30P Gene

Chromosome:
14
Start:
49,684,544 bp from pter
End:
49,684,665 bp from pter
Size:
122 bases
Orientation:
Plus strand

Genomic View for RNU6ATAC30P Gene

Genes around RNU6ATAC30P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC30P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC30P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC30P Gene

ORGUL Member Location for RNU6ATAC30P Gene

ORGUL Member Location for RNU6ATAC30P gene

Proteins for RNU6ATAC30P Gene

Post-translational modifications for RNU6ATAC30P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC30P Gene

Domains & Families for RNU6ATAC30P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC30P Gene

Function for RNU6ATAC30P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC30P Gene

Localization for RNU6ATAC30P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC30P Gene

Pathways & Interactions for RNU6ATAC30P Gene

SuperPathways for RNU6ATAC30P Gene

No Data Available

Interacting Proteins for RNU6ATAC30P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC30P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC30P Gene

Transcripts for RNU6ATAC30P Gene

mRNA/cDNA for RNU6ATAC30P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC30P Gene

No ASD Table

Relevant External Links for RNU6ATAC30P Gene

GeneLoc Exon Structure for
RNU6ATAC30P
ECgene alternative splicing isoforms for
RNU6ATAC30P

Expression for RNU6ATAC30P Gene

mRNA expression in normal human tissues for RNU6ATAC30P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC30P Gene:

RNU6ATAC30P
genes like me logo Genes that share expression patterns with RNU6ATAC30P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC30P Gene

Orthologs for RNU6ATAC30P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC30P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 75 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6atac 35
  • 74 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26249 35
  • 71 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 62 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 67 (a)
OneToMany
Species where no ortholog for RNU6ATAC30P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC30P Gene

ENSEMBL:
Gene Tree for RNU6ATAC30P (if available)
TreeFam:
Gene Tree for RNU6ATAC30P (if available)

Paralogs for RNU6ATAC30P Gene

No data available for Paralogs for RNU6ATAC30P Gene

Variants for RNU6ATAC30P Gene

Relevant External Links for RNU6ATAC30P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC30P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC30P Gene

Disorders for RNU6ATAC30P Gene

No disorders were found for RNU6ATAC30P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC30P Gene

Publications for RNU6ATAC30P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic Z.J. … Barta A. (RNA 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett R.A. … Shukla G.C. (RNA 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla G.C. … Padgett R.A. (RNA 1999) 1

Products for RNU6ATAC30P Gene

Sources for RNU6ATAC30P Gene

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