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Aliases for RNU6ATAC2P Gene

Subcategory (RNA class) for RNU6ATAC2P Gene

snRNA

Aliases for RNU6ATAC2P Gene

  • RNA, U6atac Small Nuclear 2, Pseudogene 2 3 5
  • RNA, U6atac Small Nuclear 2 Pseudogene 2

External Ids for RNU6ATAC2P Gene

ORGUL Members for RNU6ATAC2P Gene

Previous GeneCards Identifiers for RNU6ATAC2P Gene

  • GC05U900964
  • GC05M055596
  • GC05M052564
  • GC05M055600

Summaries for RNU6ATAC2P Gene

GeneCards Summary for RNU6ATAC2P Gene

RNU6ATAC2P (RNA, U6atac Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC2P Gene

Genomics for RNU6ATAC2P Gene

Regulatory Elements for RNU6ATAC2P Gene

Enhancers for RNU6ATAC2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F056326 0.9 Ensembl ENCODE 11.7 -31.5 -31463 4.7 PKNOX1 TBL1XR1 ZBTB40 DNMT3B YY1 ETV6 CREM CBFB CEBPB JUNB RNU6ATAC2P ENSG00000249697 GC05P056372
GH05F056339 0.4 FANTOM5 11.5 -41.6 -41557 0.2 RNU6ATAC2P LINC01948 ENSG00000249697 GC05P056372
GH05F056251 0.6 ENCODE 11.1 +45.7 45704 1.1 PKNOX1 ATF1 ARNT GATA2 NCOA1 NFIL3 MBD2 SMARCA4 ETV4 PBX2 RNU6ATAC2P ENSG00000237705 LINC01948 GC05M056261 RNA5SP185 ANKRD55
GH05F056355 0.8 FANTOM5 Ensembl ENCODE 10.8 -60.0 -59995 5.2 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 SP5 MIER2 PPARG RNU6ATAC2P ENSG00000237705 LINC01948 GC05P056372 ENSG00000249697
GH05F056826 1.1 FANTOM5 Ensembl ENCODE 10.4 -536.2 -536212 15.0 PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SETD9 GPBP1 HNRNPH1P3 ENSG00000237705 LINC01948 RNU6ATAC2P C5orf67 MAP3K1 GC05P056845 GC05P056846
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC2P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC2P Gene

Chromosome:
5
Start:
56,297,564 bp from pter
End:
56,297,689 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC2P Gene

Genes around RNU6ATAC2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC2P Gene

Proteins for RNU6ATAC2P Gene

Post-translational modifications for RNU6ATAC2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC2P Gene

Domains & Families for RNU6ATAC2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC2P Gene

Function for RNU6ATAC2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC2P Gene

Localization for RNU6ATAC2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC2P Gene

Pathways & Interactions for RNU6ATAC2P Gene

SuperPathways for RNU6ATAC2P Gene

No Data Available

Interacting Proteins for RNU6ATAC2P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC2P Gene

Transcripts for RNU6ATAC2P Gene

mRNA/cDNA for RNU6ATAC2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC2P Gene

No ASD Table

Relevant External Links for RNU6ATAC2P Gene

GeneLoc Exon Structure for
RNU6ATAC2P
ECgene alternative splicing isoforms for
RNU6ATAC2P

Expression for RNU6ATAC2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6ATAC2P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC2P Gene:

RNU6ATAC2P
genes like me logo Genes that share expression patterns with RNU6ATAC2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC2P Gene

Orthologs for RNU6ATAC2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 80 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 72 (a)
OneToMany
Species where no ortholog for RNU6ATAC2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC2P Gene

ENSEMBL:
Gene Tree for RNU6ATAC2P (if available)
TreeFam:
Gene Tree for RNU6ATAC2P (if available)

Paralogs for RNU6ATAC2P Gene

No data available for Paralogs for RNU6ATAC2P Gene

Variants for RNU6ATAC2P Gene

Relevant External Links for RNU6ATAC2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC2P Gene

Disorders for RNU6ATAC2P Gene

Relevant External Links for RNU6ATAC2P

Genetic Association Database (GAD)
RNU6ATAC2P

No disorders were found for RNU6ATAC2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6ATAC2P Gene

Publications for RNU6ATAC2P Gene

  1. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64

Products for RNU6ATAC2P Gene

Sources for RNU6ATAC2P Gene

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