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Aliases for RNU6ATAC2P Gene

Subcategory (RNA class) for RNU6ATAC2P Gene

snRNA

Aliases for RNU6ATAC2P Gene

  • RNA, U6atac Small Nuclear 2, Pseudogene 2 3 5
  • RNA, U6atac Small Nuclear 2 Pseudogene 2

External Ids for RNU6ATAC2P Gene

ORGUL Members for RNU6ATAC2P Gene

Previous GeneCards Identifiers for RNU6ATAC2P Gene

  • GC05U900964
  • GC05M055596
  • GC05M052564
  • GC05M055600

Summaries for RNU6ATAC2P Gene

GeneCards Summary for RNU6ATAC2P Gene

RNU6ATAC2P (RNA, U6atac Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC2P Gene

Genomics for RNU6ATAC2P Gene

Regulatory Elements for RNU6ATAC2P Gene

Enhancers for RNU6ATAC2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G056355 1.6 FANTOM5 Ensembl ENCODE 10.9 -60.0 -59995 5.2 PKNOX1 FOXA2 ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 SP5 MIER2 RNU6ATAC2P ENSG00000237705 LINC01948 GC05P056372 ENSG00000249697
GH05G056668 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -372.6 -372595 3.5 PKNOX1 BMI1 RAD21 RCOR1 RELB ETV6 IKZF2 CREM CBFB USF2 C5orf67 MAP3K1 LINC01948 RNU6ATAC2P LOC105378978 ENSG00000228650
GH05G056828 1.3 Ensembl ENCODE dbSUPER 10.3 -531.8 -531791 1.0 BRD4 HINFP ZBTB21 CDC5L FOSL1 ZNF366 SCRT2 ZNF600 ZNF639 SMARCE1 SETD9 LINC01948 RNU6ATAC2P C5orf67 MAP3K1 GC05P056846 GC05P056845
GH05G056836 1.3 Ensembl ENCODE dbSUPER 10.3 -540.4 -540412 3.0 CTCF PKNOX1 RAD21 ZNF316 ARID3A SMC3 NFE2 RELB MAFK NFE2L2 SETD9 MAP3K1 ENSG00000237705 LINC01948 RNU6ATAC2P GC05P056846 GC05P056845
GH05G056327 1.1 Ensembl ENCODE 11.7 -31.9 -31863 3.9 PKNOX1 TBL1XR1 ZBTB40 DNMT3B YY1 ZNF766 GATA4 GATA2 FOS RELB RNU6ATAC2P ENSG00000249697 GC05P056372
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC2P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC2P Gene

Chromosome:
5
Start:
56,297,564 bp from pter
End:
56,297,689 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC2P Gene

Genes around RNU6ATAC2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC2P Gene

Proteins for RNU6ATAC2P Gene

Post-translational modifications for RNU6ATAC2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC2P Gene

Domains & Families for RNU6ATAC2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC2P Gene

Function for RNU6ATAC2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC2P Gene

Localization for RNU6ATAC2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC2P Gene

Pathways & Interactions for RNU6ATAC2P Gene

SuperPathways for RNU6ATAC2P Gene

No Data Available

Interacting Proteins for RNU6ATAC2P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC2P Gene

Drugs & Compounds for RNU6ATAC2P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC2P Gene

mRNA/cDNA for RNU6ATAC2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC2P Gene

No ASD Table

Relevant External Links for RNU6ATAC2P Gene

GeneLoc Exon Structure for
RNU6ATAC2P
ECgene alternative splicing isoforms for
RNU6ATAC2P

Expression for RNU6ATAC2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC2P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC2P Gene:

RNU6ATAC2P
genes like me logo Genes that share expression patterns with RNU6ATAC2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC2P Gene

Orthologs for RNU6ATAC2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 80 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 72 (a)
OneToMany
Species where no ortholog for RNU6ATAC2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC2P Gene

ENSEMBL:
Gene Tree for RNU6ATAC2P (if available)
TreeFam:
Gene Tree for RNU6ATAC2P (if available)

Paralogs for RNU6ATAC2P Gene

No data available for Paralogs for RNU6ATAC2P Gene

Variants for RNU6ATAC2P Gene

Relevant External Links for RNU6ATAC2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC2P Gene

Disorders for RNU6ATAC2P Gene

Relevant External Links for RNU6ATAC2P

Genetic Association Database (GAD)
RNU6ATAC2P

No disorders were found for RNU6ATAC2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6ATAC2P Gene

Publications for RNU6ATAC2P Gene

  1. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64

Products for RNU6ATAC2P Gene

Sources for RNU6ATAC2P Gene

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