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Aliases for RNU6ATAC24P Gene

Aliases for RNU6ATAC24P Gene

  • RNA, U6atac Small Nuclear 24, Pseudogene 2 3 5

External Ids for RNU6ATAC24P Gene

Previous GeneCards Identifiers for RNU6ATAC24P Gene

  • GC03M195252

Summaries for RNU6ATAC24P Gene

GeneCards Summary for RNU6ATAC24P Gene

RNU6ATAC24P (RNA, U6atac Small Nuclear 24, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC24P Gene

Genomics for RNU6ATAC24P Gene

Regulatory Elements for RNU6ATAC24P Gene

Enhancers for RNU6ATAC24P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G195257 1.6 FANTOM5 ENCODE dbSUPER 12.8 +263.7 263688 3.3 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 SDHAP2 RNU6ATAC24P LSG1 LINC00969 FAM43A XXYLT1 ACAP2 GC03P195246
GH03G196163 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -641.4 -641418 2.9 HDGF ARNT ZNF493 AGO1 ARID4B SIN3A YBX1 DMAP1 ZNF2 TCF12 SDHAP2 LINC00969 ENSG00000230732 UBXN7 RNU6ATAC24P ACAP2 UBXN7-AS1 GC03P196177 LINC00885
GH03G195697 1.3 Ensembl ENCODE 12.8 -175.1 -175115 1.8 HNRNPUL1 HDGF PKNOX1 ATF1 CREB3L1 ARNT YBX1 FEZF1 ZNF2 GATA2 LINC00969 MUC20P1 SDHAP2 RNU6ATAC24P UBXN7 RNF168 MUC20 MUC4 GC03P195713 PIR60219
GH03G194583 1.4 ENCODE dbSUPER 11.1 +938.8 938844 2.3 HDGF CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 TMEM44-AS1 LSG1 OPA1-AS1 RNU6ATAC24P LOC105374291
GH03G196498 1.4 ENCODE dbSUPER 11.1 -978.6 -978641 5.9 HDGF PKNOX1 CREB3L1 MLX WRNIP1 SIN3A ARID4B DMAP1 YY1 SLC30A9 SDHAP2 RNF168 LINC00969 ENSG00000230732 ENSG00000271662 RNU6ATAC24P MUC20P1 UBXN7 ENSG00000231443 TM4SF19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC24P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC24P Gene

Chromosome:
3
Start:
195,523,087 bp from pter
End:
195,523,221 bp from pter
Size:
135 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC24P Gene

Genes around RNU6ATAC24P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC24P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC24P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC24P Gene

Proteins for RNU6ATAC24P Gene

Post-translational modifications for RNU6ATAC24P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC24P Gene

Domains & Families for RNU6ATAC24P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC24P Gene

Function for RNU6ATAC24P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC24P Gene

Localization for RNU6ATAC24P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC24P Gene

Pathways & Interactions for RNU6ATAC24P Gene

SuperPathways for RNU6ATAC24P Gene

No Data Available

Interacting Proteins for RNU6ATAC24P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC24P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC24P Gene

Transcripts for RNU6ATAC24P Gene

mRNA/cDNA for RNU6ATAC24P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC24P Gene

No ASD Table

Relevant External Links for RNU6ATAC24P Gene

GeneLoc Exon Structure for
RNU6ATAC24P
ECgene alternative splicing isoforms for
RNU6ATAC24P

Expression for RNU6ATAC24P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC24P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC24P Gene:

RNU6ATAC24P
genes like me logo Genes that share expression patterns with RNU6ATAC24P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC24P Gene

Orthologs for RNU6ATAC24P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC24P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23031 35
  • 61 (a)
ManyToMany
Gm23664 35
  • 53 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 61 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 55 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6atac 35
  • 54 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 52 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6atac 35
  • 50 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 35
  • 55 (a)
OneToMany
Species where no ortholog for RNU6ATAC24P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC24P Gene

ENSEMBL:
Gene Tree for RNU6ATAC24P (if available)
TreeFam:
Gene Tree for RNU6ATAC24P (if available)

Paralogs for RNU6ATAC24P Gene

No data available for Paralogs for RNU6ATAC24P Gene

Variants for RNU6ATAC24P Gene

Relevant External Links for RNU6ATAC24P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC24P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC24P Gene

Disorders for RNU6ATAC24P Gene

No disorders were found for RNU6ATAC24P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC24P Gene

Publications for RNU6ATAC24P Gene

No publications were found for RNU6ATAC24P Gene.

Products for RNU6ATAC24P Gene

Sources for RNU6ATAC24P Gene

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