Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6ATAC22P Gene

Subcategory (RNA class) for RNU6ATAC22P Gene

snRNA

Aliases for RNU6ATAC22P Gene

  • RNA, U6atac Small Nuclear 22, Pseudogene 2 3 5

External Ids for RNU6ATAC22P Gene

ORGUL Members for RNU6ATAC22P Gene

Previous GeneCards Identifiers for RNU6ATAC22P Gene

  • GC22M042121

Summaries for RNU6ATAC22P Gene

GeneCards Summary for RNU6ATAC22P Gene

RNU6ATAC22P (RNA, U6atac Small Nuclear 22, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC22P Gene

Genomics for RNU6ATAC22P Gene

Regulatory Elements for RNU6ATAC22P Gene

Enhancers for RNU6ATAC22P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F041763 0.7 ENCODE 11.8 -41.1 -41121 0.2 ZNF263 CTCF GLIS1 SMC3 TRIM22 RAD21 TRIM28 MEI1 RNU6ATAC22P GC22M041766 GC22P041758
GH22F041778 0.6 ENCODE 11.6 -56.1 -56101 0.2 HDGF ZNF366 GLIS1 MEI1 SREBF2 ENSG00000184068 RNU6ATAC22P ENSG00000273424 GC22M041780 PIR33994
GH22F041779 0.5 ENCODE 11.6 -59.3 -59312 3.6 HDGF TBP ATF1 PKNOX1 TBL1XR1 WRNIP1 ZBTB40 ZNF121 ELK1 ZNF207 MEI1 NDUFA6 SREBF2 ENSG00000184068 RNU6ATAC22P XPNPEP3 CENPM GC22M041780 PIR33994
GH22F041696 1.1 Ensembl ENCODE 11.5 +24.8 24824 1.5 ELF3 ARID4B ZNF48 RAD21 ZNF121 GLIS2 ZNF143 ZNF207 THAP11 KLF11 RNU6ATAC22P CENPM DESI1 XRCC6 PIR60459 PIR32740
GH22F041746 1 Ensembl ENCODE 11.3 -25.1 -25117 1.8 HDGF CTCF KLF1 SIN3A EBF1 RAD21 ZNF664 ZFHX2 GLIS2 ZNF143 MEI1 RNU6ATAC22P ENSG00000227370 ENSG00000273424 GC22P041748 GC22M041723
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC22P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC22P Gene

Chromosome:
22
Start:
41,722,043 bp from pter
End:
41,722,131 bp from pter
Size:
89 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC22P Gene

Genes around RNU6ATAC22P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC22P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC22P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC22P Gene

Proteins for RNU6ATAC22P Gene

Post-translational modifications for RNU6ATAC22P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC22P Gene

Domains & Families for RNU6ATAC22P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC22P Gene

Function for RNU6ATAC22P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC22P Gene

Localization for RNU6ATAC22P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC22P Gene

Pathways & Interactions for RNU6ATAC22P Gene

SuperPathways for RNU6ATAC22P Gene

No Data Available

Interacting Proteins for RNU6ATAC22P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC22P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC22P Gene

Transcripts for RNU6ATAC22P Gene

mRNA/cDNA for RNU6ATAC22P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC22P Gene

No ASD Table

Relevant External Links for RNU6ATAC22P Gene

GeneLoc Exon Structure for
RNU6ATAC22P
ECgene alternative splicing isoforms for
RNU6ATAC22P

Expression for RNU6ATAC22P Gene

mRNA expression in normal human tissues for RNU6ATAC22P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC22P Gene:

RNU6ATAC22P
genes like me logo Genes that share expression patterns with RNU6ATAC22P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC22P Gene

Orthologs for RNU6ATAC22P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC22P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 54 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24831 35
  • 53 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 44 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 38 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 35
  • 46 (a)
OneToMany
Species where no ortholog for RNU6ATAC22P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC22P Gene

ENSEMBL:
Gene Tree for RNU6ATAC22P (if available)
TreeFam:
Gene Tree for RNU6ATAC22P (if available)

Paralogs for RNU6ATAC22P Gene

No data available for Paralogs for RNU6ATAC22P Gene

Variants for RNU6ATAC22P Gene

Relevant External Links for RNU6ATAC22P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC22P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC22P Gene

Disorders for RNU6ATAC22P Gene

No disorders were found for RNU6ATAC22P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC22P Gene

Publications for RNU6ATAC22P Gene

No publications were found for RNU6ATAC22P Gene.

Products for RNU6ATAC22P Gene

Sources for RNU6ATAC22P Gene

Content
Loading form....