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Aliases for RNU6ATAC22P Gene

Subcategory (RNA class) for RNU6ATAC22P Gene

snRNA

Aliases for RNU6ATAC22P Gene

  • RNA, U6atac Small Nuclear 22, Pseudogene 2 3 5

External Ids for RNU6ATAC22P Gene

ORGUL Members for RNU6ATAC22P Gene

Previous GeneCards Identifiers for RNU6ATAC22P Gene

  • GC22M042121

Summaries for RNU6ATAC22P Gene

GeneCards Summary for RNU6ATAC22P Gene

RNU6ATAC22P (RNA, U6atac Small Nuclear 22, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6ATAC22P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC22P Gene

Genomics for RNU6ATAC22P Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC22P Gene

Promoters and enhancers for RNU6ATAC22P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I041831 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11 -111.1 -111071 4.2 ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZFP41 GC22M042514 PIR56266 PIR43611 PIR59506 PIR61109 PIR61729 SREBF2 PIR58030 ENSG00000184068 CYP2D8P
GH22I041856 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -137.9 -137883 7.7 PKNOX1 FOXA2 ZFP64 FEZF1 ZNF121 ZNF143 ATF7 RUNX3 JUNB REST MEI1 CYP2D6 CENPM ENSG00000184068 SREBF2 TNFRSF13C RNU6ATAC22P NDUFA6 POLR3H SMDT1
GH22I041845 Enhancer 1.3 Ensembl ENCODE dbSUPER 11 -124.3 -124295 1.4 PKNOX1 SMAD1 ATF1 ARNT YY1 NCOA2 TCF12 ZNF766 GATA2 ATF7 RNU6ATAC22P PHF5A CYP2D6 ENSG00000184068 SREBF2 MIR33A
GH22I041696 Enhancer 1.1 Ensembl ENCODE 11.5 +24.8 24824 1.5 ELF3 RB1 ARID4B SIN3A KLF5 ZNF48 RAD21 ZNF335 ZNF121 GLIS2 PIR60459 RNU6ATAC22P CENPM DESI1 XRCC6 PIR32740 C22orf46
GH22I042176 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.7 -458.4 -458392 8.2 HDGF PKNOX1 RB1 BMI1 BATF IRF4 TCF12 ZNF121 ZNF366 ATF7 CYP2D6 TCF20 SMDT1 NFAM1 NDUFA6 NDUFA6-AS1 RNU6ATAC22P ENSG00000227370 MEI1 CENPM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC22P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC22P Gene

Genomic Locations for RNU6ATAC22P Gene
chr22:41,722,043-41,722,131
(GRCh38/hg38)
Size:
89 bases
Orientation:
Minus strand
chr22:42,118,047-42,118,135
(GRCh37/hg19)

Genomic View for RNU6ATAC22P Gene

Genes around RNU6ATAC22P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC22P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC22P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC22P Gene

Proteins for RNU6ATAC22P Gene

Post-translational modifications for RNU6ATAC22P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC22P Gene

Domains & Families for RNU6ATAC22P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC22P Gene

Function for RNU6ATAC22P Gene

Phenotypes From GWAS Catalog for RNU6ATAC22P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC22P Gene

Localization for RNU6ATAC22P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC22P Gene

Pathways & Interactions for RNU6ATAC22P Gene

SuperPathways for RNU6ATAC22P Gene

No Data Available

Interacting Proteins for RNU6ATAC22P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC22P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC22P Gene

Drugs & Compounds for RNU6ATAC22P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC22P Gene

mRNA/cDNA for RNU6ATAC22P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC22P Gene

No ASD Table

Relevant External Links for RNU6ATAC22P Gene

GeneLoc Exon Structure for
RNU6ATAC22P
ECgene alternative splicing isoforms for
RNU6ATAC22P

Expression for RNU6ATAC22P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC22P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC22P Gene:

RNU6ATAC22P
genes like me logo Genes that share expression patterns with RNU6ATAC22P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC22P Gene

Orthologs for RNU6ATAC22P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC22P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34
  • 54 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24831 34
  • 53 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 44 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 38 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 34
  • 46 (a)
OneToMany
Species where no ortholog for RNU6ATAC22P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC22P Gene

ENSEMBL:
Gene Tree for RNU6ATAC22P (if available)
TreeFam:
Gene Tree for RNU6ATAC22P (if available)

Paralogs for RNU6ATAC22P Gene

No data available for Paralogs for RNU6ATAC22P Gene

Variants for RNU6ATAC22P Gene

Additional Variant Information for RNU6ATAC22P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC22P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC22P Gene

Disorders for RNU6ATAC22P Gene

No disorders were found for RNU6ATAC22P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC22P Gene

Publications for RNU6ATAC22P Gene

No publications were found for RNU6ATAC22P Gene.

Products for RNU6ATAC22P Gene

Sources for RNU6ATAC22P Gene

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