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Aliases for RNU6ATAC20P Gene

Subcategory (RNA class) for RNU6ATAC20P Gene

snRNA

Aliases for RNU6ATAC20P Gene

  • RNA, U6atac Small Nuclear 20, Pseudogene 2 3 5

External Ids for RNU6ATAC20P Gene

ORGUL Members for RNU6ATAC20P Gene

Previous GeneCards Identifiers for RNU6ATAC20P Gene

  • GC18M019713

Summaries for RNU6ATAC20P Gene

GeneCards Summary for RNU6ATAC20P Gene

RNU6ATAC20P (RNA, U6atac Small Nuclear 20, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC20P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

Additional gene information for RNU6ATAC20P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC20P Gene

Genomics for RNU6ATAC20P Gene

Regulatory Elements for RNU6ATAC20P Gene

Enhancers for RNU6ATAC20P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18H022074 1 ENCODE dbSUPER 11.3 +55.8 55830 2 ZBTB21 FEZF1 ZNF316 ZBTB48 ZSCAN5C ATF7 PRDM10 MAFK CREM MAFG RNU6ATAC20P SNRPD1 GREB1L ENSG00000263588 GC18P022048
GH18H022073 0.5 ENCODE dbSUPER 11.3 +57.1 57095 0 RNU6ATAC20P ENSG00000263588 GC18P022048
GH18H022106 1.2 ENCODE dbSUPER 0.3 +24.0 23984 1 TBP FOXA2 PKNOX1 INSM2 KLF17 RAD21 RFX5 YY1 ZNF121 GATA2 ESCO1 ENSG00000264188 ROCK1 ENSG00000263588 RNU6ATAC20P
GH18H022114 0.9 ENCODE dbSUPER 0.4 +15.0 15014 2 YY2 MAX REST ZNF398 RAD21 PRDM6 ZNF366 ZNF512 HNF4G HNF4A GATA6 RNU6ATAC20P ENSG00000263588
GH18H022093 1.2 ENCODE dbSUPER 0.3 +36.3 36283 1 HDAC1 PKNOX1 TBL1XR1 ARNT CHAMP1 TCF12 GATA2 EGR1 ATF7 CREM SNRPD1 ABHD3 ENSG00000263588 RNU6ATAC20P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC20P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC20P Gene

Chromosome:
18
Start:
22,130,603 bp from pter
End:
22,130,729 bp from pter
Size:
127 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC20P Gene

Genes around RNU6ATAC20P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC20P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC20P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC20P Gene

ORGUL Member Location for RNU6ATAC20P Gene

ORGUL Member Location for RNU6ATAC20P gene

Proteins for RNU6ATAC20P Gene

Post-translational modifications for RNU6ATAC20P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC20P Gene

Domains & Families for RNU6ATAC20P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC20P Gene

Function for RNU6ATAC20P Gene

Phenotypes From GWAS Catalog for RNU6ATAC20P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC20P Gene

Localization for RNU6ATAC20P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC20P Gene

Pathways & Interactions for RNU6ATAC20P Gene

SuperPathways for RNU6ATAC20P Gene

No Data Available

Interacting Proteins for RNU6ATAC20P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC20P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC20P Gene

Drugs & Compounds for RNU6ATAC20P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC20P Gene

mRNA/cDNA for RNU6ATAC20P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC20P Gene

No ASD Table

Relevant External Links for RNU6ATAC20P Gene

GeneLoc Exon Structure for
RNU6ATAC20P
ECgene alternative splicing isoforms for
RNU6ATAC20P

Expression for RNU6ATAC20P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC20P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC20P Gene:

RNU6ATAC20P
genes like me logo Genes that share expression patterns with RNU6ATAC20P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC20P Gene

Orthologs for RNU6ATAC20P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC20P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34
  • 78 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25338 34
  • 68 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 59 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 56 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 34
  • 63 (a)
OneToMany
Species where no ortholog for RNU6ATAC20P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC20P Gene

ENSEMBL:
Gene Tree for RNU6ATAC20P (if available)
TreeFam:
Gene Tree for RNU6ATAC20P (if available)

Paralogs for RNU6ATAC20P Gene

No data available for Paralogs for RNU6ATAC20P Gene

Variants for RNU6ATAC20P Gene

Relevant External Links for RNU6ATAC20P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC20P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC20P Gene

Disorders for RNU6ATAC20P Gene

No disorders were found for RNU6ATAC20P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC20P Gene

Publications for RNU6ATAC20P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla GC … Padgett RA (RNA (New York, N.Y.) 1999) 1

Products for RNU6ATAC20P Gene

Sources for RNU6ATAC20P Gene

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