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Aliases for RNU6ATAC17P Gene

Aliases for RNU6ATAC17P Gene

  • RNA, U6atac Small Nuclear 17, Pseudogene 2 3 5

External Ids for RNU6ATAC17P Gene

Summaries for RNU6ATAC17P Gene

GeneCards Summary for RNU6ATAC17P Gene

RNU6ATAC17P (RNA, U6atac Small Nuclear 17, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC17P Gene

Genomics for RNU6ATAC17P Gene

Regulatory Elements for RNU6ATAC17P Gene

Enhancers for RNU6ATAC17P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F025633 0.5 ENCODE 11.8 +22.0 22037 0.2 ZNF639 SP3 ZNF280D INSM2 KLF17 ZNF623 ZEB1 ZNF316 BCL11A ZNF366 ZNF337 RNU6ATAC17P NANP RN7SL594P
GH20F025642 0.5 ENCODE 11.4 +31.7 31744 0.7 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF207 PAF1 SP3 SP5 ZNF337 RNU6ATAC17P RN7SL594P NANP
GH20F025669 0.9 Ensembl ENCODE 11.2 +58.9 58867 1.1 SCRT1 CTCF CEBPB CEBPG RAD21 SCRT2 CEBPA BCL6 MAFK ZBTB26 ZNF337 NANP ZNF337-AS1 RNU6ATAC17P FAM182B GC20M025672 RN7SL594P
GH20F025525 0.8 Ensembl ENCODE 11.2 -85.1 -85110 2.1 ELF3 ARID4B DMAP1 ZSCAN9 RAD21 DNMT3B RARA FOS CREM MIXL1 ABHD12 ZNF337 ENTPD6 RNU6ATAC17P NANP ZNF337-AS1 GC20P025533 GC20P025489
GH20F025548 0.8 Ensembl ENCODE 10.8 -60.8 -60814 3.5 SOX13 CTCF KLF1 TFAP4 SAP130 KLF17 ARID4B ZNF48 ZNF644 DNMT3B ABHD12 ZNF337 RNU6ATAC17P NANP ZNF337-AS1 FAM182B PIR43236 PIR44041
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6ATAC17P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC17P Gene

Chromosome:
20
Start:
25,611,153 bp from pter
End:
25,611,223 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for RNU6ATAC17P Gene

Genes around RNU6ATAC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC17P Gene

Proteins for RNU6ATAC17P Gene

Post-translational modifications for RNU6ATAC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC17P Gene

Domains & Families for RNU6ATAC17P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC17P Gene

Function for RNU6ATAC17P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC17P Gene

Localization for RNU6ATAC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC17P Gene

Pathways & Interactions for RNU6ATAC17P Gene

SuperPathways for RNU6ATAC17P Gene

No Data Available

Interacting Proteins for RNU6ATAC17P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC17P Gene

Transcripts for RNU6ATAC17P Gene

mRNA/cDNA for RNU6ATAC17P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC17P Gene

No ASD Table

Relevant External Links for RNU6ATAC17P Gene

GeneLoc Exon Structure for
RNU6ATAC17P
ECgene alternative splicing isoforms for
RNU6ATAC17P

Expression for RNU6ATAC17P Gene

mRNA expression in normal human tissues for RNU6ATAC17P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC17P Gene:

RNU6ATAC17P
genes like me logo Genes that share expression patterns with RNU6ATAC17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6ATAC17P Gene

Orthologs for RNU6ATAC17P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC17P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm22713 35
  • 44 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 37 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 35
  • 37 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 9 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6atac 35
  • 30 (a)
OneToMany
Species where no ortholog for RNU6ATAC17P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC17P Gene

ENSEMBL:
Gene Tree for RNU6ATAC17P (if available)
TreeFam:
Gene Tree for RNU6ATAC17P (if available)

Paralogs for RNU6ATAC17P Gene

No data available for Paralogs for RNU6ATAC17P Gene

Variants for RNU6ATAC17P Gene

Relevant External Links for RNU6ATAC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC17P Gene

Disorders for RNU6ATAC17P Gene

No disorders were found for RNU6ATAC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC17P Gene

Publications for RNU6ATAC17P Gene

No publications were found for RNU6ATAC17P Gene.

Products for RNU6ATAC17P Gene

Sources for RNU6ATAC17P Gene

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