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Aliases for RNU6ATAC Gene

Subcategory (RNA class) for RNU6ATAC Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU6ATAC Gene

  • RNA, U6atac Small Nuclear (U12-Dependent Splicing) 2 3 5
  • RNA, U6atac Small Nuclear 1 2 3
  • RNU6ATAC1 3
  • U6atac 3

External Ids for RNU6ATAC Gene

ORGUL Members for RNU6ATAC Gene

Previous GeneCards Identifiers for RNU6ATAC Gene

  • GC09U900909
  • GC09M136020
  • GC09M137029
  • GC09M106522

Summaries for RNU6ATAC Gene

GeneCards Summary for RNU6ATAC Gene

RNU6ATAC (RNA, U6atac Small Nuclear (U12-Dependent Splicing)) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC Gene

Genomics for RNU6ATAC Gene

Regulatory Elements for RNU6ATAC Gene

Enhancers for RNU6ATAC Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G134442 1.5 Ensembl ENCODE dbSUPER 12.2 -278.7 -278710 2.3 HDGF PKNOX1 AGO1 WRNIP1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 ELK1 RNU6ATAC RXRA COL5A1 COL5A1-AS1 LOC105376311 MIR4669
GH09G134440 0.7 dbSUPER 12.2 -276.5 -276541 0.9 KLF1 ZSCAN4 KLF17 PAX8 ZNF2 ZFHX2 POLR2A BCLAF1 EGR2 PAF1 RNU6ATAC RXRA COL5A1 COL5A1-AS1 LOC105376311 MIR4669
GH09G134162 1.2 ENCODE 0.7 +0.1 79 3.6 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 WDR5 COL5A1-AS1 ENSG00000273473 REXO4 ENSG00000273249 RNU6ATAC GC09M134165
GH09G134134 1.1 ENCODE 0.3 +28.5 28477 4.0 PKNOX1 CREB3L1 AGO1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 WDR5 SARDH ENSG00000273249 GC09M134165 RNU6ATAC
GH09G134138 0.8 ENCODE 0.3 +25.4 25389 1.6 ATF1 RB1 SIN3A NFXL1 ZNF2 SCRT2 ZNF654 HCFC1 CEBPB ZEB2 WDR5 ENSG00000273249 GC09M134165 RNU6ATAC
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Promoters for RNU6ATAC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000242707 164 2001 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21

Genomic Location for RNU6ATAC Gene

Chromosome:
9
Start:
134,164,439 bp from pter
End:
134,164,564 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC Gene

Genes around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC Gene

Proteins for RNU6ATAC Gene

Post-translational modifications for RNU6ATAC Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC Gene

Domains & Families for RNU6ATAC Gene

Gene Families for RNU6ATAC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6ATAC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC Gene

Function for RNU6ATAC Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC Gene

Localization for RNU6ATAC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC Gene

Pathways & Interactions for RNU6ATAC Gene

SuperPathways for RNU6ATAC Gene

No Data Available

Interacting Proteins for RNU6ATAC Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC Gene

Drugs & Compounds for RNU6ATAC Gene

No Compound Related Data Available

Transcripts for RNU6ATAC Gene

mRNA/cDNA for RNU6ATAC Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC Gene

No ASD Table

Relevant External Links for RNU6ATAC Gene

GeneLoc Exon Structure for
RNU6ATAC
ECgene alternative splicing isoforms for
RNU6ATAC

Expression for RNU6ATAC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC Gene:

RNU6ATAC

SOURCE GeneReport for Unigene cluster for RNU6ATAC Gene:

Hs.545589
genes like me logo Genes that share expression patterns with RNU6ATAC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC Gene

Orthologs for RNU6ATAC Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25541 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 35
  • 94 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 35
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6atac 35
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 35
  • 71 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 35
  • 72 (a)
OneToMany
Species where no ortholog for RNU6ATAC was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC Gene

ENSEMBL:
Gene Tree for RNU6ATAC (if available)
TreeFam:
Gene Tree for RNU6ATAC (if available)

Paralogs for RNU6ATAC Gene

No data available for Paralogs for RNU6ATAC Gene

Variants for RNU6ATAC Gene

Sequence variations from dbSNP and Humsavar for RNU6ATAC Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1002897232 -- 134,164,467(+) GAAGT(A/G)GGTGG nc-transcript-variant
rs1003268400 -- 134,165,100(+) TGCGT(A/G)GTCTT upstream-variant-2KB
rs1006219830 -- 134,164,519(+) CTTCC(A/G)TCCTT nc-transcript-variant
rs1007089490 -- 134,164,269(+) CGGGC(A/G)TGGTG downstream-variant-500B
rs1007447632 -- 134,164,877(+) GCACC(C/T)CCTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNU6ATAC Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
nsv1125319 OTHER inversion 24896259
nsv825148 CNV gain 20364138

Relevant External Links for RNU6ATAC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU6ATAC Gene

Disorders for RNU6ATAC Gene

Relevant External Links for RNU6ATAC

Genetic Association Database (GAD)
RNU6ATAC
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU6ATAC

No disorders were found for RNU6ATAC Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6ATAC Gene

Publications for RNU6ATAC Gene

  1. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 46 64
  2. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla G.C. … Padgett R.A. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64
  3. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PMID: 11971955) Schneider C. … Luehrmann R. (Mol. Cell. Biol. 2002) 3 64
  4. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PMID: 12374753) Nottrott S. … LA1hrmann R. (EMBO J. 2002) 3 64
  5. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PMID: 8791582) Tarn W.Y. … Steitz J.A. (Science 1996) 3 64

Products for RNU6ATAC Gene

Sources for RNU6ATAC Gene

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