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Aliases for RNU6ATAC Gene

Subcategory (RNA class) for RNU6ATAC Gene


Quality Score for this RNA gene is


Aliases for RNU6ATAC Gene

  • RNA, U6atac Small Nuclear (U12-Dependent Splicing) 2 3
  • RNA, U6atac Small Nuclear 1 3
  • U6atac Small Nuclear 1 2
  • RNU6ATAC1 3
  • U6ATAC 3
  • RNA 2

External Ids for RNU6ATAC Gene

ORGUL Members for RNU6ATAC Gene

Previous GeneCards Identifiers for RNU6ATAC Gene

  • GC09U900909
  • GC09M136020
  • GC09M137029
  • GC09M106522

Summaries for RNU6ATAC Gene

GeneCards Summary for RNU6ATAC Gene

RNU6ATAC (RNA, U6atac Small Nuclear (U12-Dependent Splicing)) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC Gene

Genomics for RNU6ATAC Gene

Regulatory Elements for RNU6ATAC Gene

Genomic Location for RNU6ATAC Gene

134,164,439 bp from pter
134,164,564 bp from pter
126 bases
Minus strand

Genomic View for RNU6ATAC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU6ATAC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC Gene

Proteins for RNU6ATAC Gene

Post-translational modifications for RNU6ATAC Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC Gene

Domains for RNU6ATAC Gene

Gene Families for RNU6ATAC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6ATAC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC Gene

Function for RNU6ATAC Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC Gene

Localization for RNU6ATAC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC Gene

Pathways for RNU6ATAC Gene

SuperPathways for RNU6ATAC Gene

No Data Available

Interacting Proteins for RNU6ATAC Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC Gene


No data available for Pathways by source for RNU6ATAC Gene

Transcripts for RNU6ATAC Gene


(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC Gene

No ASD Table

Relevant External Links for RNU6ATAC Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6ATAC Gene

mRNA expression in normal human tissues for RNU6ATAC Gene

SOURCE GeneReport for Unigene cluster for RNU6ATAC Gene Hs.545589

genes like me logo Genes that share expressions with RNU6ATAC: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for RNU6ATAC Gene

Orthologs for RNU6ATAC Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia U6atac 36
  • 94 (a)
(Canis familiaris)
Mammalia U6atac 36
  • 81 (a)
(Monodelphis domestica)
Mammalia U6atac 36
  • 84 (a)
(Mus musculus)
Mammalia Gm25541 36
  • 96 (a)
(Ornithorhynchus anatinus)
Mammalia U6atac 36
  • 71 (a)
(Pan troglodytes)
Mammalia U6atac 36
  • 100 (a)
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 36
  • 72 (a)
Species with no ortholog for RNU6ATAC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC Gene

Gene Tree for RNU6ATAC (if available)
Gene Tree for RNU6ATAC (if available)

Paralogs for RNU6ATAC Gene

No data available for Paralogs for RNU6ATAC Gene

Variants for RNU6ATAC Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6ATAC Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV Deletion 23290073
nsv825148 CNV Gain 20364138

Relevant External Links for RNU6ATAC Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RNU6ATAC Gene

Disorders for RNU6ATAC Gene

Relevant External Links for RNU6ATAC

Genetic Association Database (GAD)

No disorders were found for RNU6ATAC Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for RNU6ATAC Gene

Publications for RNU6ATAC Gene

  1. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PMID: 8791582) Tarn W.Y. … Steitz J.A. (Science 1996) 3
  2. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PMID: 11971955) Schneider C. … Luehrmann R. (Mol. Cell. Biol. 2002) 3
  3. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PMID: 12374753) Nottrott S. … LA1hrmann R. (EMBO J. 2002) 3
  4. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 48
  5. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla G.C. … Padgett R.A. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3

Products for RNU6ATAC Gene

Sources for RNU6ATAC Gene

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