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Aliases for RNU6ATAC Gene

Subcategory (RNA class) for RNU6ATAC Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU6ATAC Gene

  • RNA, U6atac Small Nuclear (U12-Dependent Splicing) 2 3 5
  • RNA, U6atac Small Nuclear 1 3
  • U6atac Small Nuclear 1 2
  • RNU6ATAC1 3
  • U6atac 3
  • RNA 2

External Ids for RNU6ATAC Gene

ORGUL Members for RNU6ATAC Gene

Previous GeneCards Identifiers for RNU6ATAC Gene

  • GC09U900909
  • GC09M136020
  • GC09M137029
  • GC09M106522

Summaries for RNU6ATAC Gene

GeneCards Summary for RNU6ATAC Gene

RNU6ATAC (RNA, U6atac Small Nuclear (U12-Dependent Splicing)) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC Gene

Genomics for RNU6ATAC Gene

Regulatory Elements for RNU6ATAC Gene

Enhancers for RNU6ATAC Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Promoters for RNU6ATAC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC Gene

Chromosome:
9
Start:
134,164,439 bp from pter
End:
134,164,564 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC Gene

Genes around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC Gene

Proteins for RNU6ATAC Gene

Post-translational modifications for RNU6ATAC Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC Gene

Domains & Families for RNU6ATAC Gene

Gene Families for RNU6ATAC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6ATAC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC Gene

Function for RNU6ATAC Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC Gene

Localization for RNU6ATAC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6ATAC Gene

Pathways & Interactions for RNU6ATAC Gene

SuperPathways for RNU6ATAC Gene

No Data Available

Interacting Proteins for RNU6ATAC Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC Gene

Drugs & Compounds for RNU6ATAC Gene

No Compound Related Data Available

Transcripts for RNU6ATAC Gene

mRNA/cDNA for RNU6ATAC Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC Gene

No ASD Table

Relevant External Links for RNU6ATAC Gene

GeneLoc Exon Structure for
RNU6ATAC
ECgene alternative splicing isoforms for
RNU6ATAC

Expression for RNU6ATAC Gene

mRNA expression in normal human tissues for RNU6ATAC Gene

SOURCE GeneReport for Unigene cluster for RNU6ATAC Gene Hs.545589

genes like me logo Genes that share expression patterns with RNU6ATAC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU6ATAC Gene

Orthologs for RNU6ATAC Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6atac 36
  • 94 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6atac 36
  • 81 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 36
  • 84 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25541 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 36
  • 71 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia U6atac 36
  • 100 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 36
  • 72 (a)
OneToMany
Species with no ortholog for RNU6ATAC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC Gene

ENSEMBL:
Gene Tree for RNU6ATAC (if available)
TreeFam:
Gene Tree for RNU6ATAC (if available)

Paralogs for RNU6ATAC Gene

No data available for Paralogs for RNU6ATAC Gene

Variants for RNU6ATAC Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6ATAC Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV Deletion 23290073
nsv825148 CNV Gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for RNU6ATAC Gene

Disorders for RNU6ATAC Gene

Relevant External Links for RNU6ATAC

Genetic Association Database (GAD)
RNU6ATAC
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU6ATAC

No disorders were found for RNU6ATAC Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6ATAC Gene

Publications for RNU6ATAC Gene

  1. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris J.M. … Hakonarson H. (N. Engl. J. Med. 2008) 48 67
  2. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla G.C. … Padgett R.A. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3
  3. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PMID: 11971955) Schneider C. … Luehrmann R. (Mol. Cell. Biol. 2002) 3
  4. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PMID: 12374753) Nottrott S. … LA1hrmann R. (EMBO J. 2002) 3
  5. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PMID: 8791582) Tarn W.Y. … Steitz J.A. (Science 1996) 3

Products for RNU6ATAC Gene

Sources for RNU6ATAC Gene

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