RNU6ATAC Gene
RNA gene GIFtS: 18
GCID: GC09M137029
|
|
RNA, U6atac small nuclear (U12-dependent splicing)
| |
Aliases
for RNU6ATAC gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): snRNA
Quality score for this RNA gene is 3
| Aliases |
|---|
| RNA, U6atac Small Nuclear (U12-Dependent Splicing)1 2 | | RNU6ATAC11 2 | | U6ATAC2 |
| External Ids: | HGNC: 340171 | Entrez Gene: 1001516842 | Ensembl: ENSG000002216767 | OMIM: 6014295 |
Export aliases for RNU6ATAC gene to outside databasesPrevious GC identifers: GC09U900909 GC09M136020 GC09M106522
|---|
Summaries
for RNU6ATAC gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for RNU6ATAC gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000009.11 NC_018920.1 NT_035014.4
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RNU6ATAC gene promoter:
GATA-3 MEF-2 FOXD3 POU6F1 (c2) GATA-1 GATA-2 AREB6 Ik-2 HSF2 aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNU6ATAC
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU6ATAC |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q34.2 Ensembl cytogenetic band: 9q34.2 HGNC cytogenetic band: 9q34.2RNU6ATAC Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M137029: view genomic region
(about GC identifiers)
Start:
|
137,029,561 bp from pter |
End:
|
137,029,686 bp from pter |
Size:
|
126 bases |
Orientation:
|
minus strand |
|
Proteins
for RNU6ATAC gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB: --
|
Protein
Domains /
Families
for RNU6ATAC gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for RNU6ATAC gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for RNU6ATAC gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNU6ATAC
|
Drugs & Compounds
for RNU6ATAC gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNU6ATAC
Search CenterWatch for drugs/clinical trials and news about RNU6ATAC 
|
Transcripts
for RNU6ATAC gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
Unigene Cluster for RNU6ATAC: RNA, U6atac small nuclear (U12-dependent splicing) Hs.545589 Unigene Representative Sequence: U628231 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000408749(snRNA)
Additional cDNA sequence: NR_023344.1 U62823.1
GeneLoc Exon Structure
|
Expression
for RNU6ATAC gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for RNU6ATAC:none
RNU6ATAC expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
SOURCE GeneReport for Unigene cluster: Hs.545589
SABiosciences Custom PCR Arrays for RNU6ATAC
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNU6ATAC | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU6ATAC | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU6ATAC |
Orthologs
for RNU6ATAC gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for RNU6ATAC (if available)
TreeFam Gene Tree for RNU6ATAC (if available) |
Paralogs
for RNU6ATAC gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNU6ATAC gene
- ENSG000002210382 ENSG000002526202 ENSG000002217252 ENSG000002211142 ENSG000002215832 ENSG000002215642 ENSG000002518352 RNU6ATAC3P2
- ENSG000002210462 RNU6ATAC5P2 ENSG000002520272 ENSG000002213402 ENSG000002215622 ENSG000002213632 ENSG000002389532 ENSG000002214402
- ENSG000002215072 ENSG000002213752 ENSG000002523512 ENSG000002215712 ENSG000002215272 ENSG000002215742 ENSG000002108412 RNU6ATAC2P2
- ENSG000002210152 ENSG000002526032 ENSG000002526842 ENSG000002218062 ENSG000002215182 ENSG000002213872 ENSG000002212162 RNU6ATAC4P2
- ENSG000002520192 ENSG000002210232 ENSG000002214682 ENSG000002212062 ENSG000002519612 ENSG000002518832 ENSG000002212552 ENSG000002521182
- ENSG000002210592 ENSG000002385612
RNU6ATAC for paralogs About GeneDecksing
|
Genomic Variants
for RNU6ATAC gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RNU6ATAC (137029561 - 137029686 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RNU6ATAC: -- | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for RNU6ATAC gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 RNU6ATAC for disorders About MalaCards
RNU6ATAC for disorders About GeneDecksing
OMIM gene information: 601429
OMIM disorders: --
Export disorders for RNU6ATAC gene to outside databases
|
Publications
for RNU6ATAC gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RNU6ATAC gene integrated from 9 sources:
(articles sorted by number of sources associating them with RNU6ATAC) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- U4 small nuclear RNA can function in both the major and minor spliceosomes. (PubMed id 14691257)1 Shukla G.C. and Padgett R.A. (2004)
- Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PubMed id 12374753)1 Nottrott S....Luhrmann R. (2002)
- Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PubMed id 11971955)1 Schneider C.... Luehrmann R. (2002)
- Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PubMed id 8791582)1 Tarn W.Y. and Steitz J.A. (1996)
- Influence of phosphate, sulfonic, and sulfamic acids on sulfoconjugate release in the vascularly perfused mouse small intestine. (PubMed id 2409455)1 Wollenberg P. and Rummel W. (1985)
|
External Searches for RNU6ATAC gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RNU6ATAC gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RNU6ATAC gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RNU6ATAC gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for RNU6ATAC | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for RNU6ATAC gene:
Search GeneIP for patents involving RNU6ATAC
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RNU6ATAC gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNU6ATAC | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNU6ATAC | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNU6ATAC | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNU6ATAC | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNU6ATAC | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNU6ATAC |
| |
 |  |  |  | |
| | | |  |  |  |  | | | | |
 |
 |
 |
 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RNU6ATAC |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNU6ATAC |
|
|
|
|
GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
View Random Gene
|
Category
|
|
|
von Willebrand factor
|
| GIFtS Group |
|
Developed at the Crown Human Genome Center,
Department of Molecular Genetics,
the Weizmann Institute of Science
Copyright © 1996-2013
, Weizmann Institute of Science. All Rights Reserved.
hostname: 356977-web1.xennexinc.com
index build: 100 solr: 1.4
|
