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Aliases for RNU6-960P Gene

Subcategory (RNA class) for RNU6-960P Gene

snRNA

Aliases for RNU6-960P Gene

  • RNA, U6 Small Nuclear 960, Pseudogene 2 3 5

External Ids for RNU6-960P Gene

ORGUL Members for RNU6-960P Gene

Previous GeneCards Identifiers for RNU6-960P Gene

  • GC06M111416
  • GC00U934605

Summaries for RNU6-960P Gene

GeneCards Summary for RNU6-960P Gene

RNU6-960P (RNA, U6 Small Nuclear 960, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-960P Gene

Genomics for RNU6-960P Gene

Regulatory Elements for RNU6-960P Gene

Enhancers for RNU6-960P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G111230 1.3 Ensembl ENCODE 10.6 -139.1 -139058 1.5 PKNOX1 FEZF1 ZNF2 YY1 ZNF766 SP3 REST MEF2D ZNF610 GLIS1 MFSD4B ENSG00000231046 ENSG00000272356 TUBE1 RNU6-960P CNN2P9 ENSG00000255389
GH06G111227 1.1 Ensembl ENCODE 10.6 -137.3 -137266 1.6 PKNOX1 FEZF1 ZNF366 ZNF350 RCOR1 FOS ZNF362 CEBPB ZEB2 ZNF843 MFSD4B ENSG00000231046 SLC16A10 RNU6-960P CNN2P9
GH06G111061 0.7 FANTOM5 12 +29.7 29684 0.3 ZSCAN5A PKNOX1 ZNF680 ATF2 ZNF610 IKZF1 PBX2 NFE2 EGR2 SLC16A10 RNU6-960P FYN AMD1 REV3L GSTM2P1
GH06G111229 0.7 ENCODE 10.6 -138.2 -138221 0.2 TBP ZNF639 PKNOX1 GFI1B CEBPB ZEB2 CEBPG ZIC2 HIC1 PRDM6 MFSD4B ENSG00000231046 RNU6-960P CNN2P9
GH06G111200 0.6 ENCODE 12.1 -109.5 -109462 1.5 SCRT1 TFAP4 YY1 HNF1A ZNF26 SCRT2 HMBOX1 HNF4A ENSG00000272356 RNU6-960P SLC16A10 ENSG00000220506 ENSG00000231046
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-960P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-960P Gene

Chromosome:
6
Start:
111,091,213 bp from pter
End:
111,091,332 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for RNU6-960P Gene

Genes around RNU6-960P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-960P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-960P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-960P Gene

Proteins for RNU6-960P Gene

Post-translational modifications for RNU6-960P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-960P Gene

Domains & Families for RNU6-960P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-960P Gene

Function for RNU6-960P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-960P Gene

Localization for RNU6-960P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-960P Gene

Pathways & Interactions for RNU6-960P Gene

SuperPathways for RNU6-960P Gene

No Data Available

Interacting Proteins for RNU6-960P Gene

Gene Ontology (GO) - Biological Process for RNU6-960P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-960P Gene

Drugs & Compounds for RNU6-960P Gene

No Compound Related Data Available

Transcripts for RNU6-960P Gene

mRNA/cDNA for RNU6-960P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-960P Gene

No ASD Table

Relevant External Links for RNU6-960P Gene

GeneLoc Exon Structure for
RNU6-960P
ECgene alternative splicing isoforms for
RNU6-960P

Expression for RNU6-960P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-960P Gene

genes like me logo Genes that share expression patterns with RNU6-960P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-960P Gene

Orthologs for RNU6-960P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-960P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22755 35
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 68 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 66 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 65 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii U6 35
  • 56 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 35
  • 64 (a)
OneToMany
Species where no ortholog for RNU6-960P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-960P Gene

ENSEMBL:
Gene Tree for RNU6-960P (if available)
TreeFam:
Gene Tree for RNU6-960P (if available)

Paralogs for RNU6-960P Gene

No data available for Paralogs for RNU6-960P Gene

Variants for RNU6-960P Gene

Relevant External Links for RNU6-960P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-960P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-960P Gene

Disorders for RNU6-960P Gene

No disorders were found for RNU6-960P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-960P Gene

Publications for RNU6-960P Gene

No publications were found for RNU6-960P Gene.

Products for RNU6-960P Gene

Sources for RNU6-960P Gene

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