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Aliases for RNU6-955P Gene

Subcategory (RNA class) for RNU6-955P Gene

snRNA

Aliases for RNU6-955P Gene

  • RNA, U6 Small Nuclear 955, Pseudogene 2 3 5

External Ids for RNU6-955P Gene

ORGUL Members for RNU6-955P Gene

Previous GeneCards Identifiers for RNU6-955P Gene

  • GC17M004528
  • GC00U935718

Summaries for RNU6-955P Gene

GeneCards Summary for RNU6-955P Gene

RNU6-955P (RNA, U6 Small Nuclear 955, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-955P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-955P Gene

Genomics for RNU6-955P Gene

GeneHancer (GH) Regulatory Elements for RNU6-955P Gene

Promoters and enhancers for RNU6-955P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I004583 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 12.8 +33.3 33260 6.3 PKNOX1 KLF17 SIN3A ZNF76 ZNF2 ZEB1 ZNF335 TCF12 GLIS2 SCRT2 SMTNL2 GGT6 RNU6-955P ALOX15 SHPK DERL2 VMO1 LINC01996
GH17I004847 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -229.8 -229780 4.4 PKNOX1 ZBTB6 MAX ZBTB40 RFX5 SMC3 RCOR1 FOS SMARCE1 STAT1 CHRNE ENO3 PFN1 ZMYND15 ARRB2 C17orf107 PLD2 CXCL16 LOC101559451 PELP1
GH17I004594 Enhancer 1 Ensembl ENCODE dbSUPER 12.8 +24.8 24770 1.4 RING1 CTCF KLF1 ZNF792 NRF1 PYGO2 REST RAD21 HIC1 ZKSCAN8 LOC100130950 RPAIN ZNF594 RNU6-955P ENSG00000263272 ALOX15 GGT6 ZNF232 PELP1 ENSG00000263164
GH17I004559 Promoter/Enhancer 1.1 EPDnew ENCODE 11.4 +59.3 59295 1.4 CTCF USF1 NFIB BHLHE40 USF2 ZIC2 RAD21 KAT8 MITF SCRT2 GGT6 RNU6-955P MYBBP1A
GH17I004518 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.8 +99.0 98955 4.7 MAX BATF IRF4 ZFHX2 GATA3 POLR2A IKZF2 ZNF687 RXRA CEBPB ENSG00000263220 ZNF594 GGT6 RNU6-955P DHX33 RPAIN ENSG00000235085 ENSG00000262165 SPNS2 PIR53941
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-955P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-955P Gene

Genomic Locations for RNU6-955P Gene
chr17:4,619,749-4,619,852
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-955P Gene

Genes around RNU6-955P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-955P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-955P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-955P Gene

Proteins for RNU6-955P Gene

Post-translational modifications for RNU6-955P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-955P Gene

Domains & Families for RNU6-955P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-955P Gene

Function for RNU6-955P Gene

Phenotypes From GWAS Catalog for RNU6-955P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-955P Gene

Localization for RNU6-955P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-955P Gene

Pathways & Interactions for RNU6-955P Gene

SuperPathways for RNU6-955P Gene

No Data Available

Interacting Proteins for RNU6-955P Gene

Gene Ontology (GO) - Biological Process for RNU6-955P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-955P Gene

Drugs & Compounds for RNU6-955P Gene

No Compound Related Data Available

Transcripts for RNU6-955P Gene

mRNA/cDNA for RNU6-955P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-955P Gene

No ASD Table

Relevant External Links for RNU6-955P Gene

GeneLoc Exon Structure for
RNU6-955P
ECgene alternative splicing isoforms for
RNU6-955P

Expression for RNU6-955P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-955P Gene

genes like me logo Genes that share expression patterns with RNU6-955P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-955P Gene

Orthologs for RNU6-955P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-955P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 81 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24491 34
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 78 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 75 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 68 (a)
ManyToMany
Species where no ortholog for RNU6-955P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-955P Gene

ENSEMBL:
Gene Tree for RNU6-955P (if available)
TreeFam:
Gene Tree for RNU6-955P (if available)

Paralogs for RNU6-955P Gene

No data available for Paralogs for RNU6-955P Gene

Variants for RNU6-955P Gene

Additional Variant Information for RNU6-955P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-955P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-955P Gene

Disorders for RNU6-955P Gene

No disorders were found for RNU6-955P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-955P Gene

Publications for RNU6-955P Gene

No publications were found for RNU6-955P Gene.

Products for RNU6-955P Gene

Sources for RNU6-955P Gene

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