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Aliases for RNU6-9 Gene

Subcategory (RNA class) for RNU6-9 Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU6-9 Gene

  • RNA, U6 Small Nuclear 9 2 3 5
  • U6-9 3

External Ids for RNU6-9 Gene

Previous GeneCards Identifiers for RNU6-9 Gene

  • GC00U922584
  • GC03P180950

Summaries for RNU6-9 Gene

GeneCards Summary for RNU6-9 Gene

RNU6-9 (RNA, U6 Small Nuclear 9) is an RNA Gene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-9 Gene

Genomics for RNU6-9 Gene

Regulatory Elements for RNU6-9 Gene

Enhancers for RNU6-9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G000906 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.1 15075 4.7 HDGF FOXA2 PKNOX1 CREB3L1 MLX ARNT AGO1 ARID4B SIN3A DMAP1 CFD MIDN ARHGAP45 R3HDM4 ABCA7 ELANE PRTN3 GZMM SBNO2 CIRBP
GH19G000912 1.2 ENCODE dbSUPER 0.4 +19.7 19656 1.7 ELF3 HDGF SIN3A ZNF76 ZBTB40 ELK1 EGR1 KDM4B CREM SP3 R3HDM4 RNU6-9
GH19G000907 1 ENCODE dbSUPER 0.4 +9.9 9872 0.2 PKNOX1 KLF17 ZIC2 HIC1 GLIS2 PATZ1 ADNP KLF7 PRDM10 EGR2 CFD ELANE PRTN3 RNU6-9 R3HDM4
GH19G000903 1 ENCODE dbSUPER 0.4 +10.2 10192 0.2 KLF1 KLF17 ZIC2 HIC1 GLIS2 ZFHX2 PATZ1 KLF7 PRDM10 EGR2 CFD ELANE PRTN3 R3HDM4 RNU6-9
GH19G000898 0.9 ENCODE dbSUPER 0.4 +5.4 5389 0.9 MXI1 RFX1 AGO1 BMI1 RFX5 POLR2A RFX3 PATZ1 MYNN GLIS1 CFD ELANE PRTN3 MED16 RNU6-9 R3HDM4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-9 on UCSC Golden Path with GeneCards custom track

Promoters for RNU6-9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000105567 -484 1601 HDGF FOXA2 CREB3L1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for RNU6-9 Gene

Chromosome:
19
Start:
893,484 bp from pter
End:
893,590 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-9 Gene

Genes around RNU6-9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-9 Gene

Proteins for RNU6-9 Gene

Post-translational modifications for RNU6-9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-9 Gene

Domains & Families for RNU6-9 Gene

Gene Families for RNU6-9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6-9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-9 Gene

Function for RNU6-9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-9 Gene

Localization for RNU6-9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-9 Gene

Pathways & Interactions for RNU6-9 Gene

SuperPathways for RNU6-9 Gene

No Data Available

Interacting Proteins for RNU6-9 Gene

Gene Ontology (GO) - Biological Process for RNU6-9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-9 Gene

Drugs & Compounds for RNU6-9 Gene

No Compound Related Data Available

Transcripts for RNU6-9 Gene

mRNA/cDNA for RNU6-9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-9 Gene

No ASD Table

Relevant External Links for RNU6-9 Gene

GeneLoc Exon Structure for
RNU6-9
ECgene alternative splicing isoforms for
RNU6-9

Expression for RNU6-9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-9 Gene

genes like me logo Genes that share expression patterns with RNU6-9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-9 Gene

Orthologs for RNU6-9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 35
  • 100 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 100 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24205 35
  • 100 (a)
ManyToMany
Gm24260 35
  • 100 (a)
ManyToMany
Gm26496 35
  • 100 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves U6 35
  • 100 (a)
OneToMany
Species where no ortholog for RNU6-9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-9 Gene

ENSEMBL:
Gene Tree for RNU6-9 (if available)
TreeFam:
Gene Tree for RNU6-9 (if available)

Paralogs for RNU6-9 Gene

No data available for Paralogs for RNU6-9 Gene

Variants for RNU6-9 Gene

Sequence variations from dbSNP and Humsavar for RNU6-9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000487089 -- 893,592(+) TTTTT(C/T)TTTTT downstream-variant-500B, upstream-variant-2KB
rs1002289588 -- 893,466(+) GCTGG(C/T)GGTGG upstream-variant-2KB
rs1002353658 -- 893,738(+) GATTA(C/T)AAACA downstream-variant-500B, upstream-variant-2KB
rs1002485324 -- 892,150(+) GCTTC(A/G)CAAAG intron-variant, upstream-variant-2KB
rs1002620083 -- 892,943(+) GCCCC(A/G)GGCCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNU6-9 Gene

Variant ID Type Subtype PubMed ID
dgv134n111 CNV deletion 26073780
dgv135n111 CNV deletion 26073780
esv1002005 CNV deletion 20482838
esv1972594 CNV deletion 18987734
esv2523863 CNV deletion 19546169
esv2672070 CNV deletion 23128226
esv2733339 CNV deletion 23290073
esv2758743 CNV gain+loss 17122850
esv2758896 CNV gain+loss 17122850
esv2758920 CNV gain+loss 17122850
esv2759205 CNV gain 17122850
esv3259 CNV loss 18987735
esv3545926 CNV deletion 23714750
esv3574862 CNV loss 25503493
esv3574863 CNV loss 25503493
esv3584226 CNV gain 25503493
esv3643383 CNV gain 21293372
esv3643384 CNV loss 21293372
esv3643385 CNV gain 21293372
esv3890859 CNV loss 25118596
esv3891198 CNV gain 25118596
esv8509 CNV loss 19470904
esv996651 CNV deletion 20482838
nsv1041463 CNV gain 25217958
nsv1068280 CNV deletion 25765185
nsv1160555 CNV deletion 26073780
nsv1578 CNV insertion 18451855
nsv2385 CNV insertion 18451855
nsv3041 CNV insertion 18451855
nsv428427 CNV gain 18775914
nsv469845 CNV loss 16826518
nsv470101 CNV loss 18288195
nsv512148 CNV loss 21212237
nsv524931 CNV gain 19592680
nsv545381 CNV gain 21841781
nsv545382 CNV loss 21841781
nsv569803 CNV gain 21841781
nsv578188 CNV loss 21841781
nsv7462 OTHER inversion 18451855
nsv826912 CNV gain 20364138
nsv828360 CNV loss 20364138
nsv829809 CNV loss 17160897
nsv832764 CNV gain 17160897
nsv833704 CNV gain 17160897
nsv953938 CNV deletion 24416366
nsv956356 CNV deletion 24416366
nsv9662 CNV gain 18304495

Relevant External Links for RNU6-9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU6-9 Gene

Disorders for RNU6-9 Gene

No disorders were found for RNU6-9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-9 Gene

Publications for RNU6-9 Gene

  1. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. (PMID: 12711679) Domitrovich A.M. … Kunkel G.R. (Nucleic Acids Res. 2003) 2 3 64

Products for RNU6-9 Gene

Sources for RNU6-9 Gene

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