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Aliases for RNU6-882P Gene

Subcategory (RNA class) for RNU6-882P Gene

snRNA

Aliases for RNU6-882P Gene

  • RNA, U6 Small Nuclear 882, Pseudogene 2 3 5

External Ids for RNU6-882P Gene

ORGUL Members for RNU6-882P Gene

Previous GeneCards Identifiers for RNU6-882P Gene

  • GC03M009964
  • GC00U936158

Summaries for RNU6-882P Gene

GeneCards Summary for RNU6-882P Gene

RNU6-882P (RNA, U6 Small Nuclear 882, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-882P Gene

Genomics for RNU6-882P Gene

Regulatory Elements for RNU6-882P Gene

Enhancers for RNU6-882P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F009351 1.4 Ensembl ENCODE 15.7 +566.0 566004 4.1 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 FEZF1 SLC30A9 RNU6-882P THUMPD3-AS1 SRGAP3 THUMPD3 PGAM1P4 GC03M009360
GH03F009861 1.6 FANTOM5 Ensembl ENCODE 12 +55.5 55458 5.0 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF143 KLF13 IL17RC JAGN1 CIDEC TADA3 IL17RE ARPC4 RNU6-882P TTLL3 ARPC4-TTLL3 CAMK1
GH03F009984 1.2 Ensembl 15.8 -65.7 -65748 0.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 SRGAP3-AS3 SRGAP3-AS1 ATP2B2-IT1 ENSG00000230599 RNU6-882P FANCD2 RNU6-670P CYCSP10 PRRT3 RPUSD3
GH03F010024 1.2 ENCODE 15.8 -107.1 -107100 2.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SRGAP3-AS3 FANCD2OS BRK1 ATP2B2-IT1 ENSG00000230599 RNU6-882P CRELD1 FANCD2 CYCSP10 ATP2B2-IT2
GH03F009745 1.2 ENCODE 15.7 +170.5 170484 5.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 THUMPD3-AS1 RNU6-882P ENSG00000269894 TATDN2 EMC3-AS1 TADA3 ARPC4 RPUSD3 OGG1 BRPF1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-882P on UCSC Golden Path with GeneCards custom track

Promoters for RNU6-882P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001844978 1853 1001 HDGF ATF1 PKNOX1 ARID4B SIN3A YY1 GLIS2 ZNF207 ZNF263 SP3

Genomic Location for RNU6-882P Gene

Chromosome:
3
Start:
9,919,051 bp from pter
End:
9,919,153 bp from pter
Size:
103 bases
Orientation:
Minus strand

Genomic View for RNU6-882P Gene

Genes around RNU6-882P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-882P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-882P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-882P Gene

Proteins for RNU6-882P Gene

Post-translational modifications for RNU6-882P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-882P Gene

Domains & Families for RNU6-882P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-882P Gene

Function for RNU6-882P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-882P Gene

Localization for RNU6-882P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-882P Gene

Pathways & Interactions for RNU6-882P Gene

SuperPathways for RNU6-882P Gene

No Data Available

Interacting Proteins for RNU6-882P Gene

Gene Ontology (GO) - Biological Process for RNU6-882P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-882P Gene

Transcripts for RNU6-882P Gene

mRNA/cDNA for RNU6-882P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-882P Gene

No ASD Table

Relevant External Links for RNU6-882P Gene

GeneLoc Exon Structure for
RNU6-882P
ECgene alternative splicing isoforms for
RNU6-882P

Expression for RNU6-882P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-882P Gene

genes like me logo Genes that share expression patterns with RNU6-882P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-882P Gene

Orthologs for RNU6-882P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-882P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 80 (a)
OneToOne
Species where no ortholog for RNU6-882P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-882P Gene

ENSEMBL:
Gene Tree for RNU6-882P (if available)
TreeFam:
Gene Tree for RNU6-882P (if available)

Paralogs for RNU6-882P Gene

No data available for Paralogs for RNU6-882P Gene

Variants for RNU6-882P Gene

Relevant External Links for RNU6-882P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-882P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-882P Gene

Disorders for RNU6-882P Gene

No disorders were found for RNU6-882P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-882P Gene

Publications for RNU6-882P Gene

No publications were found for RNU6-882P Gene.

Products for RNU6-882P Gene

Sources for RNU6-882P Gene

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