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Aliases for RNU6-863P Gene

Subcategory (RNA class) for RNU6-863P Gene

snRNA

Aliases for RNU6-863P Gene

  • RNA, U6 Small Nuclear 863, Pseudogene 2 3 5

External Ids for RNU6-863P Gene

ORGUL Members for RNU6-863P Gene

Previous GeneCards Identifiers for RNU6-863P Gene

  • GC07P075719
  • GC00U934648

Summaries for RNU6-863P Gene

GeneCards Summary for RNU6-863P Gene

RNU6-863P (RNA, U6 Small Nuclear 863, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-863P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

View fRNAdb secondary structures for RNU6-863P

Additional gene information for RNU6-863P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-863P Gene

Genomics for RNU6-863P Gene

GeneHancer (GH) Regulatory Elements for RNU6-863P Gene

Promoters and enhancers for RNU6-863P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I076086 Enhancer 1 Ensembl ENCODE 550.8 +1.0 1000 4.9 PKNOX1 NEUROD1 SIN3A ZBTB7B ZNF207 FOS RCOR1 ELK4 GATAD2B ELF1 RNU6-863P STYXL1 MDH2 ENSG00000230882 PMS2P3 STAG3L1 NSUN5P1 GTF2IRD2B SRRM3 RHBDD2
GH07I076082 Enhancer 0.5 ENCODE 0.8 -4.9 -4866 0.2 OSR2 CEBPB CEBPG SP7 SRRM3 RNU6-863P PIR61782 GTF2IP7
GH07I076104 Enhancer 1.1 Ensembl ENCODE 0.3 +20.1 20068 5.1 FOXA2 ARID4B SIN3A ZNF48 YY1 FOS SP5 REST KAT8 SREBF1 STYXL1 MDH2 ENSG00000230882 SRRM3 CCL26 RHBDD2 ENSG00000213549 RNU6-863P ENSG00000224273 GTF2IP7
GH07I076074 Enhancer 0.5 ENCODE 0.4 -12.1 -12148 0.9 ZNF121 EGR1 TRIM24 ZBTB33 ENSG00000230882 GC07M076132 GC07M076140 PIR41043 PIR37532 PIR46065 PIR61782 STYXL1 MDH2 SRRM3
GH07I076091 Enhancer 0.2 ENCODE 0.8 +4.0 3983 0.2 SRRM3 RNU6-863P ENSG00000213549 GTF2IP7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-863P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-863P Gene

Genomic Locations for RNU6-863P Gene
chr7:76,087,444-76,087,547
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for RNU6-863P Gene

Genes around RNU6-863P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-863P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-863P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-863P Gene

ORGUL Member Location for RNU6-863P Gene

ORGUL Member Location for RNU6-863P gene

Proteins for RNU6-863P Gene

Post-translational modifications for RNU6-863P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-863P Gene

Domains & Families for RNU6-863P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-863P Gene

Function for RNU6-863P Gene

Phenotypes From GWAS Catalog for RNU6-863P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-863P Gene

Localization for RNU6-863P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-863P Gene

Pathways & Interactions for RNU6-863P Gene

SuperPathways for RNU6-863P Gene

No Data Available

Interacting Proteins for RNU6-863P Gene

Gene Ontology (GO) - Biological Process for RNU6-863P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-863P Gene

Drugs & Compounds for RNU6-863P Gene

No Compound Related Data Available

Transcripts for RNU6-863P Gene

fRNAdb Secondary structures for RNU6-863P Gene

  • RF00026;U6;ABBA01005903.1/58016-58119

mRNA/cDNA for RNU6-863P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-863P Gene

No ASD Table

Relevant External Links for RNU6-863P Gene

GeneLoc Exon Structure for
RNU6-863P
ECgene alternative splicing isoforms for
RNU6-863P

Expression for RNU6-863P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-863P Gene

genes like me logo Genes that share expression patterns with RNU6-863P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-863P Gene

Orthologs for RNU6-863P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-863P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 78 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 69 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26149 34
  • 68 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 63 (a)
ManyToMany
Species where no ortholog for RNU6-863P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-863P Gene

ENSEMBL:
Gene Tree for RNU6-863P (if available)
TreeFam:
Gene Tree for RNU6-863P (if available)

Paralogs for RNU6-863P Gene

No data available for Paralogs for RNU6-863P Gene

Variants for RNU6-863P Gene

Additional Variant Information for RNU6-863P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-863P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-863P Gene

Disorders for RNU6-863P Gene

No disorders were found for RNU6-863P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-863P Gene

Publications for RNU6-863P Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal snRNAs. (PMID: 2977088) Guthrie C … Patterson B (Annual review of genetics 1988) 1

Products for RNU6-863P Gene

Sources for RNU6-863P Gene

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