Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-853P Gene

Subcategory (RNA class) for RNU6-853P Gene

snRNA

Aliases for RNU6-853P Gene

  • RNA, U6 Small Nuclear 853, Pseudogene 2 3 5

External Ids for RNU6-853P Gene

ORGUL Members for RNU6-853P Gene

Previous GeneCards Identifiers for RNU6-853P Gene

  • GC04P169808
  • GC00U935813

Summaries for RNU6-853P Gene

GeneCards Summary for RNU6-853P Gene

RNU6-853P (RNA, U6 Small Nuclear 853, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-853P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-853P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-853P Gene

Genomics for RNU6-853P Gene

GeneHancer (GH) Regulatory Elements for RNU6-853P Gene

Promoters and enhancers for RNU6-853P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I168794 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -88.9 -88901 4.1 PKNOX1 JUN SIN3A BRCA1 RFX5 GATA3 POLR2A RCOR1 FOSL2 FOS ENSG00000249609 PALLD RNU6-853P ENSG00000249623 RNU6-1336P DDX60L DDX60 GC04P168775 PIR54806 GC04M168514
GH04I168852 Enhancer 1.1 Ensembl ENCODE dbSUPER 13 -28.3 -28306 9.2 HDGF ZNF146 BACH1 BMI1 BATF IRF4 RELA ZNF121 NFATC1 ATF7 CBR4 RNU6-853P ENSG00000249609 PALLD ENSG00000249623 RNU6-1336P LOC102723331 ENSG00000279384 GC04M168514
GH04I168721 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.6 -161.2 -161169 5.1 SMAD1 BACH1 BMI1 BATF ZNF207 ATF7 ZSCAN29 MAFK IKZF2 SRF RNU6-853P RNU6-1336P ENSG00000249623 PALLD ENSG00000249609 RPL9P16 GC04M168514
GH04I168847 Enhancer 1 Ensembl ENCODE dbSUPER 12.4 -36.3 -36325 2.9 SCRT1 CEBPG YY1 OSR2 MAFF PRDM6 ZNF316 GATA3 POLR2A SCRT2 RNU6-853P CBR4 ENSG00000279384 LOC102723331 GC04M168514 PALLD
GH04I168839 Enhancer 1 Ensembl ENCODE dbSUPER 12.3 -43.0 -42980 6.1 MEIS2 ZBTB6 RXRA HLF RAD21 NR2F2 SP1 POU5F1 HNF4G HNF4A ENSG00000279384 GC04P168842 RNU6-853P RNU6-1336P ENSG00000249623 PALLD CBR4 PTGES3P3 ENSG00000249609 GC04M168514
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-853P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-853P Gene

Genomic Locations for RNU6-853P Gene
chr4:168,885,355-168,885,461
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-853P Gene

Genes around RNU6-853P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-853P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-853P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-853P Gene

ORGUL Member Location for RNU6-853P Gene

ORGUL Member Location for RNU6-853P gene

Proteins for RNU6-853P Gene

Post-translational modifications for RNU6-853P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-853P Gene

Domains & Families for RNU6-853P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-853P Gene

Function for RNU6-853P Gene

Phenotypes From GWAS Catalog for RNU6-853P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-853P Gene

Localization for RNU6-853P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-853P Gene

Pathways & Interactions for RNU6-853P Gene

SuperPathways for RNU6-853P Gene

No Data Available

Interacting Proteins for RNU6-853P Gene

Gene Ontology (GO) - Biological Process for RNU6-853P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-853P Gene

Drugs & Compounds for RNU6-853P Gene

No Compound Related Data Available

Transcripts for RNU6-853P Gene

mRNA/cDNA for RNU6-853P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-853P Gene

No ASD Table

Relevant External Links for RNU6-853P Gene

GeneLoc Exon Structure for
RNU6-853P
ECgene alternative splicing isoforms for
RNU6-853P

Expression for RNU6-853P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-853P Gene

genes like me logo Genes that share expression patterns with RNU6-853P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-853P Gene

Orthologs for RNU6-853P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-853P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22575 34
  • 74 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 69 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 63 (a)
OneToOne
Species where no ortholog for RNU6-853P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-853P Gene

ENSEMBL:
Gene Tree for RNU6-853P (if available)
TreeFam:
Gene Tree for RNU6-853P (if available)

Paralogs for RNU6-853P Gene

No data available for Paralogs for RNU6-853P Gene

Variants for RNU6-853P Gene

Additional Variant Information for RNU6-853P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-853P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-853P Gene

Disorders for RNU6-853P Gene

No disorders were found for RNU6-853P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-853P Gene

Publications for RNU6-853P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-853P Gene

Sources for RNU6-853P Gene

Content
Loading form....