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Aliases for RNU6-83P Gene

Subcategory (RNA class) for RNU6-83P Gene

snRNA

Aliases for RNU6-83P Gene

  • RNA, U6 Small Nuclear 83, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 83 2
  • RNU6-83 3

External Ids for RNU6-83P Gene

ORGUL Members for RNU6-83P Gene

Previous HGNC Symbols for RNU6-83P Gene

  • RNU6-83

Previous GeneCards Identifiers for RNU6-83P Gene

  • GC13P099680

Summaries for RNU6-83P Gene

GeneCards Summary for RNU6-83P Gene

RNU6-83P (RNA, U6 Small Nuclear 83, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-83P Gene

Genomics for RNU6-83P Gene

Regulatory Elements for RNU6-83P Gene

Enhancers for RNU6-83P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G098971 1.6 FANTOM5 ENCODE dbSUPER 12.4 -49.7 -49681 8.0 PKNOX1 SIN3A FEZF1 TCF12 ZNF766 ELK1 GATA2 FOS SMARCA4 MYNN DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13M098967 RPL7L1P12
GH13G099044 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +21.0 20970 2.7 PKNOX1 MAX CEBPG ZNF664 CTBP1 ZNF316 GATA3 ZBTB48 GLI2 SCRT2 DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13M099085
GH13G098996 1.3 Ensembl ENCODE dbSUPER 13.1 -27.0 -26973 2.8 HDAC1 PKNOX1 ETV1 JUN MAX ZNF644 RAD21 YY1 FOSL1 HNF4G DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13P098992 GC13P099026
GH13G098959 1.3 Ensembl ENCODE dbSUPER 11.5 -64.5 -64459 3.5 CTCF TFAP4 SAP130 MAX ARID4B DMAP1 RAD21 TEAD3 RARA ZFHX2 DOCK9-AS2 RNU6-83P DOCK9 RPL7L1P12 GC13M098967
GH13G099004 1.1 Ensembl ENCODE 13.1 -20.4 -20380 1.7 ELF3 PKNOX1 FOXA2 RB1 SIN3A ZNF2 ZBTB40 RAD21 YY1 ZNF335 DOCK9-AS2 RNU6-83P DOCK9 DOCK9-AS1 GC13P098992 GC13P099026
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-83P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-83P Gene

Chromosome:
13
Start:
99,025,234 bp from pter
End:
99,025,345 bp from pter
Size:
112 bases
Orientation:
Plus strand

Genomic View for RNU6-83P Gene

Genes around RNU6-83P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-83P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-83P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-83P Gene

Proteins for RNU6-83P Gene

Post-translational modifications for RNU6-83P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-83P Gene

Domains & Families for RNU6-83P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-83P Gene

Function for RNU6-83P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-83P Gene

Localization for RNU6-83P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-83P Gene

Pathways & Interactions for RNU6-83P Gene

SuperPathways for RNU6-83P Gene

No Data Available

Interacting Proteins for RNU6-83P Gene

Gene Ontology (GO) - Biological Process for RNU6-83P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-83P Gene

Drugs & Compounds for RNU6-83P Gene

No Compound Related Data Available

Transcripts for RNU6-83P Gene

mRNA/cDNA for RNU6-83P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-83P Gene

No ASD Table

Relevant External Links for RNU6-83P Gene

GeneLoc Exon Structure for
RNU6-83P
ECgene alternative splicing isoforms for
RNU6-83P

Expression for RNU6-83P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-83P Gene

genes like me logo Genes that share expression patterns with RNU6-83P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-83P Gene

Orthologs for RNU6-83P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-83P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25207 35
  • 88 (a)
ManyToMany
Gm24164 35
  • 82 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 85 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6 35
  • 85 (a)
OneToMany
Species where no ortholog for RNU6-83P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-83P Gene

ENSEMBL:
Gene Tree for RNU6-83P (if available)
TreeFam:
Gene Tree for RNU6-83P (if available)

Paralogs for RNU6-83P Gene

No data available for Paralogs for RNU6-83P Gene

Variants for RNU6-83P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-83P Gene

Variant ID Type Subtype PubMed ID
esv2747870 CNV deletion 23290073
esv3892433 CNV gain 25118596
nsv1050094 CNV gain 25217958

Relevant External Links for RNU6-83P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-83P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-83P Gene

Disorders for RNU6-83P Gene

Relevant External Links for RNU6-83P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNU6-83P

No disorders were found for RNU6-83P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-83P Gene

Publications for RNU6-83P Gene

No publications were found for RNU6-83P Gene.

Products for RNU6-83P Gene

Sources for RNU6-83P Gene

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