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Aliases for RNU6-6P Gene

Subcategory (RNA class) for RNU6-6P Gene

snRNA

Aliases for RNU6-6P Gene

  • RNA, U6 Small Nuclear 6, Pseudogene 2 3
  • RNA, U6B Small Nuclear 2 3
  • RNA, U6 Small Nuclear 6 2
  • RNU6-6 3
  • RNU6B 3
  • U6-6 3

External Ids for RNU6-6P Gene

ORGUL Members for RNU6-6P Gene

Previous HGNC Symbols for RNU6-6P Gene

  • RNU6B
  • RNU6-6

Summaries for RNU6-6P Gene

GeneCards Summary for RNU6-6P Gene

RNU6-6P (RNA, U6 Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-6P Gene

Genomics for RNU6-6P Gene

Genomic Location for RNU6-6P Gene

Start:
13,217,269 bp from pter
End:
13,217,375 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-6P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU6-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-6P Gene

No data available for Regulatory Elements for RNU6-6P Gene

Proteins for RNU6-6P Gene

Post-translational modifications for RNU6-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-6P Gene

Domains for RNU6-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-6P Gene

Function for RNU6-6P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU6-6P Gene

Localization for RNU6-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-6P Gene

Pathways for RNU6-6P Gene

SuperPathways for RNU6-6P Gene

No Data Available

Interacting Proteins for RNU6-6P Gene

Gene Ontology (GO) - Biological Process for RNU6-6P Gene

None

No data available for Pathways by source for RNU6-6P Gene

Transcripts for RNU6-6P Gene

mRNA/cDNA for RNU6-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-6P Gene

No ASD Table

Relevant External Links for RNU6-6P Gene

GeneLoc Exon Structure for
RNU6-6P
ECgene alternative splicing isoforms for
RNU6-6P

Expression for RNU6-6P Gene

mRNA expression in normal human tissues for RNU6-6P Gene

genes like me logo Genes that share expressions with RNU6-6P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNU6-6P Gene

Orthologs for RNU6-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-6P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 36
  • 100 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22295 36
  • 100 (a)
OneToMany
Gm26317 36
  • 100 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 36
  • 100 (a)
ManyToMany
Species with no ortholog for RNU6-6P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-6P Gene

ENSEMBL:
Gene Tree for RNU6-6P (if available)
TreeFam:
Gene Tree for RNU6-6P (if available)

Paralogs for RNU6-6P Gene

No data available for Paralogs for RNU6-6P Gene

Variants for RNU6-6P Gene

Sequence variations from dbSNP and Humsavar for RNU6-6P Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs7099854 -- 13,216,174(+) GCCAC(C/T)GTGCC upstream-variant-2KB
rs9329339 -- 13,215,443(+) AACCT(C/T)CATTC upstream-variant-2KB
rs10508456 -- 13,216,732(+) AATCA(A/G)GGTTC upstream-variant-2KB
rs11258255 -- 13,215,601(+) CTCCC(A/G)GGTTC upstream-variant-2KB
rs11258256 -- 13,215,803(+) CACCC(C/T)GGCCA upstream-variant-2KB

Relevant External Links for RNU6-6P Gene

HapMap Linkage Disequilibrium report
RNU6-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNU6-6P Gene

Disorders for RNU6-6P Gene

No disorders were found for RNU6-6P Gene.

No data available for UniProtKB/Swiss-Prot for RNU6-6P Gene

Publications for RNU6-6P Gene

  1. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. (PMID: 12711679) Domitrovich A.M. … Kunkel G.R. (Nucleic Acids Res. 2003) 2 3
  2. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3
  3. Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. (PMID: 22246180) Rasche N. … Luhrmann R. (EMBO J. 2012) 3
  4. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3
  5. Identification of suitable reference genes for hepatic microRNA quantitation. (PMID: 24606728) Lamba V. … Lamba J.K. (BMC Res Notes 2014) 3

Products for RNU6-6P Gene

Sources for RNU6-6P Gene

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