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Aliases for RNU6-678P Gene

Aliases for RNU6-678P Gene

  • RNA, U6 Small Nuclear 678, Pseudogene 2 3 5

External Ids for RNU6-678P Gene

Previous GeneCards Identifiers for RNU6-678P Gene

  • GC03P133385
  • GC00U934613

Summaries for RNU6-678P Gene

GeneCards Summary for RNU6-678P Gene

RNU6-678P (RNA, U6 Small Nuclear 678, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-678P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-678P Gene

Genomics for RNU6-678P Gene

GeneHancer (GH) Regulatory Elements for RNU6-678P Gene

Promoters and enhancers for RNU6-678P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I133663 Enhancer 1 Ensembl ENCODE 550.8 -1.0 -1026 0.6 ELF3 ARID4B RAD21 RARA TCF12 ZNF143 THAP11 ZNF654 RXRA REST TOPBP1 RNU6-678P TF TFP1
GH03I133441 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 -211.2 -211225 24.8 PKNOX1 CLOCK FOXA2 SMAD1 NEUROD1 SIN3A FEZF1 IRF4 ZNF48 YY1 BFSP2 CDV3 TOPBP1 TFP1 RNU6-678P BFSP2-AS1 ENSG00000249820
GH03I133742 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.2 +77.9 77938 0.8 FOXA2 ARNT MLX ARID4B DMAP1 ZNF48 ETS1 YY1 RXRA SP5 RNU6-678P TOPBP1 TF PIR42738 LOC100421637 TFP1
GH03I133469 Enhancer 1.1 FANTOM5 dbSUPER 9.5 -195.4 -195409 0.4 ELF3 FOXA2 ARID4B BATF THRB RARA YY1 TCF12 CREM MIXL1 TOPBP1 TFP1 BFSP2 RNU6-678P GC03P133476 GC03P133475 BFSP2-AS1
GH03I133466 Enhancer 1 Ensembl ENCODE dbSUPER 9.5 -197.4 -197409 2.5 POLR2A GLIS1 NR2F1 HLF IKZF1 ZBED1 NBN RUNX3 BFSP2 TOPBP1 RNU6-678P TFP1 GC03P133475 GC03P133476 BFSP2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-678P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-678P Gene

Genomic Locations for RNU6-678P Gene
chr3:133,664,926-133,665,034
(GRCh38/hg38)
Size:
109 bases
Orientation:
Plus strand

Genomic View for RNU6-678P Gene

Genes around RNU6-678P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-678P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-678P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-678P Gene

Proteins for RNU6-678P Gene

Post-translational modifications for RNU6-678P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-678P Gene

Domains & Families for RNU6-678P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-678P Gene

Function for RNU6-678P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-678P Gene

Localization for RNU6-678P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-678P Gene

Pathways & Interactions for RNU6-678P Gene

SuperPathways for RNU6-678P Gene

No Data Available

Interacting Proteins for RNU6-678P Gene

Gene Ontology (GO) - Biological Process for RNU6-678P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-678P Gene

Drugs & Compounds for RNU6-678P Gene

No Compound Related Data Available

Transcripts for RNU6-678P Gene

mRNA/cDNA for RNU6-678P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-678P Gene

No ASD Table

Relevant External Links for RNU6-678P Gene

GeneLoc Exon Structure for
RNU6-678P
ECgene alternative splicing isoforms for
RNU6-678P

Expression for RNU6-678P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-678P Gene

genes like me logo Genes that share expression patterns with RNU6-678P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-678P Gene

Orthologs for RNU6-678P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-678P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm26122 34
  • 84 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 61 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 59 (a)
OneToOne
Species where no ortholog for RNU6-678P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-678P Gene

ENSEMBL:
Gene Tree for RNU6-678P (if available)
TreeFam:
Gene Tree for RNU6-678P (if available)

Paralogs for RNU6-678P Gene

No data available for Paralogs for RNU6-678P Gene

Variants for RNU6-678P Gene

Additional Variant Information for RNU6-678P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-678P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-678P Gene

Disorders for RNU6-678P Gene

No disorders were found for RNU6-678P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-678P Gene

Publications for RNU6-678P Gene

No publications were found for RNU6-678P Gene.

Products for RNU6-678P Gene

Sources for RNU6-678P Gene

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