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Aliases for RNU6-672P Gene

Subcategory (RNA class) for RNU6-672P Gene

snRNA

Aliases for RNU6-672P Gene

  • RNA, U6 Small Nuclear 672, Pseudogene 2 3 5

External Ids for RNU6-672P Gene

ORGUL Members for RNU6-672P Gene

Previous GeneCards Identifiers for RNU6-672P Gene

  • GC11M072582
  • GC00U936009

Summaries for RNU6-672P Gene

GeneCards Summary for RNU6-672P Gene

RNU6-672P (RNA, U6 Small Nuclear 672, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-672P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-672P Gene

Genomics for RNU6-672P Gene

GeneHancer (GH) Regulatory Elements for RNU6-672P Gene

Promoters and enhancers for RNU6-672P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I072811 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 +55.4 55440 5.5 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A ATG16L2 STARD10 ENSG00000248671 NUMA1 LOC100128494 ARAP1 ZNF705E RNU6-672P IL18BP ARAP1-AS1
GH11I072821 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 11.4 +47.3 47253 1.6 SIN3A ZNF2 GLIS2 ELK1 ATF7 RUNX3 SP3 GTF2B REST ZNF592 NUMA1 IL18BP LOC100128494 ARAP1 RPS12P20 ARAP1-AS2 RNU6-672P ARAP1-AS1 OR7E128P ATG16L2
GH11I073173 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.6 -306.4 -306440 5.4 FOXA2 ARID4B DMAP1 ZNF2 IRF4 YY1 ARID2 ZNF143 RUNX3 RXRA ENSG00000256568 FCHSD2 RNU6-672P STARD10 ARAP1 LOC105369381
GH11I072974 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -105.9 -105851 3 MAX JUNB CEBPB CEBPG BATF EP300 ATF2 ZNF217 JUND STAT3 GC11M072974 FCHSD2 RNU6-672P RELT RPL15P16 GC11P072924
GH11I072762 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 9.9 +104.3 104338 5.6 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 RUNX3 RXRA SP5 MXD4 ENSG00000202522 GC11P072768 ARAP1 STARD10 ATG16L2 RPS12P20 ARAP1-AS2 PDE2A ARAP1-AS1 RNU6-672P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-672P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-672P Gene

Genomic Locations for RNU6-672P Gene
chr11:72,869,544-72,869,650
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-672P Gene

Genes around RNU6-672P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-672P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-672P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-672P Gene

Proteins for RNU6-672P Gene

Post-translational modifications for RNU6-672P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-672P Gene

Domains & Families for RNU6-672P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-672P Gene

Function for RNU6-672P Gene

Phenotypes From GWAS Catalog for RNU6-672P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-672P Gene

Localization for RNU6-672P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-672P Gene

Pathways & Interactions for RNU6-672P Gene

SuperPathways for RNU6-672P Gene

No Data Available

Interacting Proteins for RNU6-672P Gene

Gene Ontology (GO) - Biological Process for RNU6-672P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-672P Gene

Drugs & Compounds for RNU6-672P Gene

No Compound Related Data Available

Transcripts for RNU6-672P Gene

mRNA/cDNA for RNU6-672P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-672P Gene

No ASD Table

Relevant External Links for RNU6-672P Gene

GeneLoc Exon Structure for
RNU6-672P
ECgene alternative splicing isoforms for
RNU6-672P

Expression for RNU6-672P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-672P Gene

genes like me logo Genes that share expression patterns with RNU6-672P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-672P Gene

Orthologs for RNU6-672P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-672P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34 34
  • 92 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26138 34
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 90 (a)
ManyToMany
Species where no ortholog for RNU6-672P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-672P Gene

ENSEMBL:
Gene Tree for RNU6-672P (if available)
TreeFam:
Gene Tree for RNU6-672P (if available)

Paralogs for RNU6-672P Gene

No data available for Paralogs for RNU6-672P Gene

Variants for RNU6-672P Gene

Additional Variant Information for RNU6-672P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-672P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-672P Gene

Disorders for RNU6-672P Gene

No disorders were found for RNU6-672P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-672P Gene

Publications for RNU6-672P Gene

No publications were found for RNU6-672P Gene.

Products for RNU6-672P Gene

Sources for RNU6-672P Gene

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