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Aliases for RNU6-66P Gene

Subcategory (RNA class) for RNU6-66P Gene


Aliases for RNU6-66P Gene

  • RNA, U6 Small Nuclear 66, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 66 2
  • RNU6-66 3

External Ids for RNU6-66P Gene

ORGUL Members for RNU6-66P Gene

Previous HGNC Symbols for RNU6-66P Gene

  • RNU6-66

Previous GeneCards Identifiers for RNU6-66P Gene

  • GC13M073690

Summaries for RNU6-66P Gene

GeneCards Summary for RNU6-66P Gene

RNU6-66P (RNA, U6 Small Nuclear 66, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-66P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-66P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-66P Gene

Genomics for RNU6-66P Gene

Regulatory Elements for RNU6-66P Gene

Enhancers for RNU6-66P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H073088 1.5 Ensembl ENCODE dbSUPER 13.1 +22.8 22828 3.2 ATF1 ARID4B ETS1 ATF7 FOS SP5 JUNB TSHZ1 PPARG ZNF623 DIS3 PIBF1 RNU6-66P FABP5P1 KLF5
GH13H073333 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -223.8 -223791 6.8 TBP FOXA2 BRCA1 RAD21 RFX5 YY1 FOS ELK4 NFYA CEBPB RNU6-66P GC13P073401 GC13P073400 RNY1P8
GH13H073166 1.2 Ensembl ENCODE dbSUPER 10.9 -57.8 -57839 9.3 PKNOX1 RFX1 JUN CEBPB MNT ZNF384 EP300 GTF3C2 JUND ZNF24 DIS3 BORA RNU4-10P RNU6-66P RNU7-89P GC13P073192
GH13H073136 0.9 Ensembl ENCODE 12.1 -26.5 -26508 5.7 PKNOX1 STAT1 FOXA2 JUN CEBPB NR3C1 EP300 BRCA1 FOXA1 JUND RNU6-66P RNU4-10P GC13M073170
GH13H073198 0.9 ENCODE dbSUPER 11.4 -87.3 -87312 4.1 FOXA2 JUN CEBPB EP300 GTF3C2 JUND POLR3A POLR2A FOS TCF7L2 DIS3 BORA RNU6-66P GC13M073184 RNU4-10P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-66P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-66P Gene

Genomic Locations for RNU6-66P Gene
104 bases
Minus strand

Genomic View for RNU6-66P Gene

Genes around RNU6-66P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-66P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-66P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-66P Gene

ORGUL Member Location for RNU6-66P Gene

ORGUL Member Location for RNU6-66P gene

Proteins for RNU6-66P Gene

Post-translational modifications for RNU6-66P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-66P Gene

Domains & Families for RNU6-66P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-66P Gene

Function for RNU6-66P Gene

Phenotypes From GWAS Catalog for RNU6-66P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-66P Gene

Localization for RNU6-66P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-66P Gene

Pathways & Interactions for RNU6-66P Gene

SuperPathways for RNU6-66P Gene

No Data Available

Interacting Proteins for RNU6-66P Gene

Gene Ontology (GO) - Biological Process for RNU6-66P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6-66P Gene

Drugs & Compounds for RNU6-66P Gene

No Compound Related Data Available

Transcripts for RNU6-66P Gene

mRNA/cDNA for RNU6-66P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-66P Gene

No ASD Table

Relevant External Links for RNU6-66P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6-66P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-66P Gene

Orthologs for RNU6-66P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-66P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
(Canis familiaris)
Mammalia U6 34
  • 79 (a)
(Mus musculus)
Mammalia Gm25814 34
  • 79 (a)
(Monodelphis domestica)
Mammalia U6 34
  • 74 (a)
(Anolis carolinensis)
Reptilia U6 34
  • 72 (a)
Species where no ortholog for RNU6-66P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-66P Gene

Gene Tree for RNU6-66P (if available)
Gene Tree for RNU6-66P (if available)

Paralogs for RNU6-66P Gene

No data available for Paralogs for RNU6-66P Gene

Variants for RNU6-66P Gene

Relevant External Links for RNU6-66P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-66P Gene

Disorders for RNU6-66P Gene

Relevant External Links for RNU6-66P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RNU6-66P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-66P Gene

Publications for RNU6-66P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-66P Gene

Sources for RNU6-66P Gene

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