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Aliases for RNU6-66P Gene

Subcategory (RNA class) for RNU6-66P Gene

snRNA

Aliases for RNU6-66P Gene

  • RNA, U6 Small Nuclear 66, Pseudogene 2 3
  • RNA, U6 Small Nuclear 66 2
  • RNU6-66 3

External Ids for RNU6-66P Gene

ORGUL Members for RNU6-66P Gene

Previous Symbols for RNU6-66P Gene

  • RNU6-66

Summaries for RNU6-66P Gene

GeneCards Summary for RNU6-66P Gene

RNU6-66P (RNA, U6 Small Nuclear 66, Pseudogene) is a Pseudogene, and belongs to snRNA RNA class.

fRNAdb sequence ontologies for RNU6-66P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-66P Gene

Genomics for RNU6-66P Gene

Genomic Location for RNU6-66P Gene

Start:
73,112,915 bp from pter
End:
73,113,018 bp from pter
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-66P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNU6-66P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-66P Gene

ORGUL Member Location for RNU6-66P Gene

ORGUL Member Location for RNU6-66P gene

No data available for Regulatory Elements for RNU6-66P Gene

Proteins for RNU6-66P Gene

Post-translational modifications for RNU6-66P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-66P Gene

Domains for RNU6-66P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNU6-66P Gene

Function for RNU6-66P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNU6-66P Gene

Localization for RNU6-66P Gene

No data available for Gene Ontology (GO) - Cellular Components for RNU6-66P Gene

Pathways for RNU6-66P Gene

SuperPathways for RNU6-66P Gene

No Data Available

Interacting Proteins for RNU6-66P Gene

Gene Ontology (GO) - Biological Process for RNU6-66P Gene

None

No data available for Pathways by source for RNU6-66P Gene

Transcripts for RNU6-66P Gene

mRNA/cDNA for RNU6-66P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-66P Gene

No ASD Table

Relevant External Links for RNU6-66P Gene

GeneLoc Exon Structure for
RNU6-66P
ECgene alternative splicing isoforms for
RNU6-66P

Expression for RNU6-66P Gene

No Expression Related Data Available

Orthologs for RNU6-66P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-66P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 37
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25814 37
  • 79 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 37
  • 74 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U6 37
  • 72 (a)
OneToMany
Species with no ortholog for RNU6-66P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-66P Gene

ENSEMBL:
Gene Tree for RNU6-66P (if available)
TreeFam:
Gene Tree for RNU6-66P (if available)

Paralogs for RNU6-66P Gene

No data available for Paralogs for RNU6-66P Gene

Variants for RNU6-66P Gene

Sequence variations from dbSNP and Humsavar for RNU6-66P Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs975964 -- 73,113,870(+) GAGTC(C/T)AAAAG upstream-variant-2KB
rs2503689 -- 73,114,174(+) TCCAC(A/G)TTGGC upstream-variant-2KB
rs7993928 -- 73,114,518(+) AATTT(A/G)CACTT upstream-variant-2KB
rs9600069 -- 73,113,971(+) CTTTT(C/T)TTTTT upstream-variant-2KB
rs12869579 -- 73,113,972(+) TTTTC(C/T)ttttt upstream-variant-2KB

Relevant External Links for RNU6-66P Gene

HapMap Linkage Disequilibrium report
RNU6-66P

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNU6-66P Gene

Disorders for RNU6-66P Gene

No disorders were found for RNU6-66P Gene.

No data available for UniProtKB/Swiss-Prot for RNU6-66P Gene

Publications for RNU6-66P Gene

No publications were found for RNU6-66P Gene.

Products for RNU6-66P Gene

Sources for RNU6-66P Gene

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