Aliases for RNU6-619P Gene
Subcategory (RNA class) for RNU6-619P Gene
snRNA
External Ids for RNU6-619P Gene
- HGNC: 47582
- Entrez Gene: 106479840
- Ensembl: ENSG00000202016
Previous GeneCards Identifiers for RNU6-619P Gene
- GC02P223366
- GC00U934412
Summaries for RNU6-619P Gene
GeneCards Summary for RNU6-619P Gene
RNU6-619P (RNA, U6 Small Nuclear 619, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.
fRNAdb sequence ontologies for RNU6-619P Gene - the ORGUL cluster for this gene includes several descriptions:
-
U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.
-
U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.
Additional gene information for RNU6-619P Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-619P Gene
Genomics for RNU6-619P Gene
GeneHancer (GH) Regulatory Elements for RNU6-619P Gene
Promoters and enhancers for RNU6-619P Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02I222433 | Enhancer | 0.7 | ENCODE | 11 | -64.0 | -63971 | 2.3 | USF1 BACH1 MZF1 SIN3A BMI1 IRF4 POLR2A ATF7 IKZF2 RUNX3 | RNU6-619P ENSG00000261428 SGPP2 NANOGP2 | |
| GH02I222470 | Enhancer | 0.5 | ENCODE | 11.6 | -27.3 | -27294 | 0.2 | ZNF580 PRDM10 FEZF1 ZNF843 TRIM28 | RNU6-619P SGPP2 NANOGP2 | |
| GH02I222398 | Enhancer | 0.5 | ENCODE | 10.4 | -99.6 | -99556 | 0.9 | USF1 RFX1 POLR2A HLF RFX5 | SGPP2 LOC440934 RNU6-619P GC02P222405 PAX3 | |
| GH02I222549 | Enhancer | 0.3 | ENCODE | 10.9 | +50.9 | 50876 | 0.2 | ZBTB17 | LOC440934 RNU6-619P GC02M222558 GAPDHP49 SGPP2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around RNU6-619P on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for RNU6-619P Gene
Genomic Locations for RNU6-619P Gene
- chr2:222,498,291-222,498,398
- (GRCh38/hg38)
- Size:
- 108 bases
- Orientation:
- Plus strand
Genomic View for RNU6-619P Gene
Genes around RNU6-619P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q36.1 by Ensembl
- 2q36.1 by Entrez Gene
- 2q36.1 by HGNC
RNU6-619P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNU6-619P Gene
ORGUL Member Location for RNU6-619P Gene
Proteins for RNU6-619P Gene
Post-translational modifications for RNU6-619P Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for RNU6-619P
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU6-619P
- Origene Custom Protein Services for RNU6-619P
- Search GeneTex for Proteins for RNU6-619P
No data available for DME Specific Peptides for RNU6-619P Gene
Domains & Families for RNU6-619P Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-619P Gene
Function for RNU6-619P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU6-619P
-
- Search ViGene Biosciences for RNU6-619P
CRISPR Products
- Browse CRISPR knockouts for RNU6-619P
miRNA Products
- Search ViGene Biosciences for RNU6-619P
Inhibitory RNA Products
- Search ViGene Biosciences for RNU6-619P
Clone Products
- GenScript: Custom all cDNA clones Services for RNU6-619P
- VectorBuilder custom plasmid, inducible vectors for RNU6-619P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU6-619P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-619P Gene
Localization for RNU6-619P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-619P Gene
Transcripts for RNU6-619P Gene
fRNAdb Secondary structures for RNU6-619P Gene
mRNA/cDNA for RNU6-619P Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for RNU6-619P
miRNA Products
- Search ViGene Biosciences for RNU6-619P
Inhibitory RNA Products
- Search ViGene Biosciences for RNU6-619P
Clone Products
- GenScript: Custom all cDNA clones Services for RNU6-619P
- VectorBuilder custom plasmid, inducible vectors for RNU6-619P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU6-619P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for RNU6-619P Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-619P Gene
Orthologs for RNU6-619P Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | U6 34 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | U6 34 |
|
ManyToMany | |
| mouse (Mus musculus) |
Mammalia | Gm24491 34 |
|
OneToMany | |
| cow (Bos Taurus) |
Mammalia | U6 34 |
|
ManyToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | U6 34 |
|
OneToMany | |
| oppossum (Monodelphis domestica) |
Mammalia | U6 34 |
|
ManyToMany |
- Species where no ortholog for RNU6-619P was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RNU6-619P Gene
No data available for Paralogs for RNU6-619P Gene
Variants for RNU6-619P Gene
Additional Variant Information for RNU6-619P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNU6-619P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-619P Gene
Disorders for RNU6-619P Gene
No disorders were found for RNU6-619P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-619P Gene
Publications for RNU6-619P Gene
- The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
- Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
- The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1
Products for RNU6-619P Gene
- Browse R&D Systems for Antibodies
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- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU6-619P
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- Novus Biologicals
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- Browse Antibodies at Cloud-Clone Corp.
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU6-619P
- VectorBuilder custom plasmid, inducible vectors for RNU6-619P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNU6-619P
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for RNU6-619P
- Search GeneTex for Proteins for RNU6-619P
Sources for RNU6-619P Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew