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Aliases for RNU6-58P Gene

Aliases for RNU6-58P Gene

  • RNA, U6 Small Nuclear 58, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 58 2
  • RNU6-58 3

External Ids for RNU6-58P Gene

Previous HGNC Symbols for RNU6-58P Gene

  • RNU6-58

Previous GeneCards Identifiers for RNU6-58P Gene

  • GC13M023793

Summaries for RNU6-58P Gene

GeneCards Summary for RNU6-58P Gene

RNU6-58P (RNA, U6 Small Nuclear 58, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-58P Gene

Genomics for RNU6-58P Gene

Regulatory Elements for RNU6-58P Gene

Enhancers for RNU6-58P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G023180 0.5 ENCODE 11.2 +36.4 36434 1.3 CBX8 FOXA2 HLF RNU6-58P SGCG PIR56522 LINC00362
GH13G023212 0.6 ENCODE 0.7 +4.6 4618 0.1 ZHX2 CEBPB DPF2 RAD51 GATA3 CTBP1 TARDBP KLF9 CUX1 SGCG RNU6-58P PIR56522
GH13G023241 0.3 FANTOM5 0.3 -23.9 -23865 0.4 TATDN2P3 RNU6-58P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-58P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-58P Gene

Chromosome:
13
Start:
23,217,432 bp from pter
End:
23,217,534 bp from pter
Size:
103 bases
Orientation:
Minus strand

Genomic View for RNU6-58P Gene

Genes around RNU6-58P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-58P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-58P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-58P Gene

Proteins for RNU6-58P Gene

Post-translational modifications for RNU6-58P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-58P Gene

Domains & Families for RNU6-58P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-58P Gene

Function for RNU6-58P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-58P Gene

Localization for RNU6-58P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-58P Gene

Pathways & Interactions for RNU6-58P Gene

SuperPathways for RNU6-58P Gene

No Data Available

Interacting Proteins for RNU6-58P Gene

Gene Ontology (GO) - Biological Process for RNU6-58P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-58P Gene

Transcripts for RNU6-58P Gene

mRNA/cDNA for RNU6-58P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-58P Gene

No ASD Table

Relevant External Links for RNU6-58P Gene

GeneLoc Exon Structure for
RNU6-58P
ECgene alternative splicing isoforms for
RNU6-58P

Expression for RNU6-58P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-58P Gene

genes like me logo Genes that share expression patterns with RNU6-58P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-58P Gene

Orthologs for RNU6-58P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-58P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23676 35
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 63 (a)
OneToOne
Species where no ortholog for RNU6-58P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-58P Gene

ENSEMBL:
Gene Tree for RNU6-58P (if available)
TreeFam:
Gene Tree for RNU6-58P (if available)

Paralogs for RNU6-58P Gene

No data available for Paralogs for RNU6-58P Gene

Variants for RNU6-58P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-58P Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
esv2422437 CNV duplication 17116639
esv2422502 CNV duplication 17116639
esv2751136 CNV loss 17911159
esv3580576 CNV loss 25503493
esv3631515 CNV loss 21293372
esv3892311 CNV gain 25118596
esv5325 OTHER complex 18987735
nsv1040787 CNV gain 25217958
nsv1046471 CNV gain 25217958
nsv1046767 CNV gain 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv455838 CNV gain 19166990
nsv471123 CNV loss 18288195
nsv520725 CNV loss 19592680
nsv525965 CNV gain 19592680
nsv561288 CNV gain 21841781
nsv561292 CNV loss 21841781

Relevant External Links for RNU6-58P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-58P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-58P Gene

Disorders for RNU6-58P Gene

No disorders were found for RNU6-58P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-58P Gene

Publications for RNU6-58P Gene

No publications were found for RNU6-58P Gene.

Products for RNU6-58P Gene

Sources for RNU6-58P Gene

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