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Aliases for RNU6-588P Gene

Aliases for RNU6-588P Gene

  • RNA, U6 Small Nuclear 588, Pseudogene 2 3 5

External Ids for RNU6-588P Gene

Previous GeneCards Identifiers for RNU6-588P Gene

  • GC05M148987
  • GC00U934979

Summaries for RNU6-588P Gene

GeneCards Summary for RNU6-588P Gene

RNU6-588P (RNA, U6 Small Nuclear 588, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-588P Gene

Genomics for RNU6-588P Gene

Regulatory Elements for RNU6-588P Gene

Enhancers for RNU6-588P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F149495 1.9 Ensembl ENCODE 10.4 +109.5 109465 4.1 ZNF362 ZNF664 ZNF316 POLR2A SCRT2 ZNF512 FOS MAFK EMSY PRDM1 ARHGEF37 MIR145 RPL29P14 CSNK1A1 MIR143 RNU6-588P CARMN IL17B PCYOX1L ENSG00000230551
GH05F149403 1.8 VISTA Ensembl ENCODE 10.4 +191.7 191693 23.4 ZFP64 ARID4B SIN3A YBX1 ZNF48 ZNF121 ZNF766 GLIS2 CBX5 ZNF143 LOC105378223 RNU6-588P ARHGEF37 CSNK1A1 RPL29P14 AFAP1L1 ENSG00000248647 ENSG00000253406 IL17B RPL7P1
GH05F149319 1.6 FANTOM5 Ensembl ENCODE 10.4 +284.1 284143 6.6 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B DMAP1 YY1 CBX5 FOS PCYOX1L GRPEL2 LOC105378223 GRPEL2-AS1 MIR145 AFAP1L1 MIR143 CARMN IL17B RNU6-588P
GH05F149792 1.5 FANTOM5 Ensembl ENCODE 10.9 -187.9 -187860 5.2 MLX ZFP64 ARID4B DMAP1 FEZF1 ZNF48 GLIS2 FOS SP5 NFYC RNU6-588P GRPEL2-AS1 PPARGC1B RPS14 CARMN GC05P149853 GC05P149733
GH05F149481 1.6 FANTOM5 Ensembl ENCODE 10.1 +120.2 120173 9.5 ATF1 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF121 GATA2 ZNF416 ARHGEF37 HMGXB3 TIGD6 MIR145 RPL29P14 CSNK1A1 CARMN MIR143 IL17B RNU6-588P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-588P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-588P Gene

Chromosome:
5
Start:
149,606,637 bp from pter
End:
149,606,741 bp from pter
Size:
105 bases
Orientation:
Minus strand

Genomic View for RNU6-588P Gene

Genes around RNU6-588P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-588P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-588P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-588P Gene

Proteins for RNU6-588P Gene

Post-translational modifications for RNU6-588P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-588P Gene

Domains & Families for RNU6-588P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-588P Gene

Function for RNU6-588P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-588P Gene

Localization for RNU6-588P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-588P Gene

Pathways & Interactions for RNU6-588P Gene

SuperPathways for RNU6-588P Gene

No Data Available

Interacting Proteins for RNU6-588P Gene

Gene Ontology (GO) - Biological Process for RNU6-588P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-588P Gene

Transcripts for RNU6-588P Gene

mRNA/cDNA for RNU6-588P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-588P Gene

No ASD Table

Relevant External Links for RNU6-588P Gene

GeneLoc Exon Structure for
RNU6-588P
ECgene alternative splicing isoforms for
RNU6-588P

Expression for RNU6-588P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-588P Gene

genes like me logo Genes that share expression patterns with RNU6-588P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-588P Gene

Orthologs for RNU6-588P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-588P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35 35
  • 80 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22950 35
  • 79 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 75 (a)
ManyToMany
Species where no ortholog for RNU6-588P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-588P Gene

ENSEMBL:
Gene Tree for RNU6-588P (if available)
TreeFam:
Gene Tree for RNU6-588P (if available)

Paralogs for RNU6-588P Gene

No data available for Paralogs for RNU6-588P Gene

Variants for RNU6-588P Gene

Relevant External Links for RNU6-588P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-588P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-588P Gene

Disorders for RNU6-588P Gene

No disorders were found for RNU6-588P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-588P Gene

Publications for RNU6-588P Gene

No publications were found for RNU6-588P Gene.

Products for RNU6-588P Gene

Sources for RNU6-588P Gene

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