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Aliases for RNU6-572P Gene

Aliases for RNU6-572P Gene

  • RNA, U6 Small Nuclear 572, Pseudogene 2 3 5

External Ids for RNU6-572P Gene

Previous GeneCards Identifiers for RNU6-572P Gene

  • GC05P138559
  • GC00U934882

Summaries for RNU6-572P Gene

GeneCards Summary for RNU6-572P Gene

RNU6-572P (RNA, U6 Small Nuclear 572, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-572P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-572P Gene

Genomics for RNU6-572P Gene

GeneHancer (GH) Regulatory Elements for RNU6-572P Gene

Promoters and enhancers for RNU6-572P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I139196 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 -24.0 -23988 2.7 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF766 SIL1 KDM3B CDC23 RPL7P19 RNU6-572P GC05P139162 GC05P139163 GC05P138946
GH05I139261 Enhancer 1.1 Ensembl ENCODE 0.3 +41.1 41138 1.9 ARID4B SIN3A ZNF2 ETS1 ZNF766 ZNF213 ZNF207 ZNF143 ATF7 RUNX3 SLC23A1 ENSG00000280987 SNHG4 MATR3 SIL1 RNU6-572P GC05P138946
GH05I139177 Enhancer 1 Ensembl ENCODE 0.3 -43.1 -43141 2.4 PKNOX1 SMAD1 NFIB BMI1 IRF4 ZNF335 GLIS2 BCLAF1 IKZF2 RUNX3 PURA CDC23 GC05P139162 GC05P139163 RNU6-572P SIL1 GC05P138946
GH05I139245 Enhancer 0.9 Ensembl ENCODE 0.3 +24.7 24736 1.1 ETV1 ZKSCAN1 FOSL1 ZNF335 ZFHX2 GLIS2 EGR1 VEZF1 EGR2 MAZ RNU6-572P ENSG00000280987 MATR3 SNHG4 SIL1 GC05P138946
GH05I139188 Enhancer 0.9 ENCODE 0.3 -32.9 -32891 0.8 ATF1 PKNOX1 FOXA2 ARNT FEZF1 TCF12 GATA2 ATF7 RXRA NFIL3 LOC105379194 GC05P139162 GC05P139163 RNU6-572P SIL1 GC05P138946
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-572P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-572P Gene

Genomic Locations for RNU6-572P Gene
chr5:139,221,758-139,221,837
(GRCh38/hg38)
Size:
80 bases
Orientation:
Plus strand

Genomic View for RNU6-572P Gene

Genes around RNU6-572P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-572P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-572P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-572P Gene

Proteins for RNU6-572P Gene

Post-translational modifications for RNU6-572P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-572P Gene

Domains & Families for RNU6-572P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-572P Gene

Function for RNU6-572P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-572P Gene

Localization for RNU6-572P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-572P Gene

Pathways & Interactions for RNU6-572P Gene

SuperPathways for RNU6-572P Gene

No Data Available

Interacting Proteins for RNU6-572P Gene

Gene Ontology (GO) - Biological Process for RNU6-572P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-572P Gene

Drugs & Compounds for RNU6-572P Gene

No Compound Related Data Available

Transcripts for RNU6-572P Gene

mRNA/cDNA for RNU6-572P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-572P Gene

No ASD Table

Relevant External Links for RNU6-572P Gene

GeneLoc Exon Structure for
RNU6-572P
ECgene alternative splicing isoforms for
RNU6-572P

Expression for RNU6-572P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-572P Gene

Orthologs for RNU6-572P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-572P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22045 34
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 65 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 64 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 63 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 54 (a)
OneToOne
Species where no ortholog for RNU6-572P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-572P Gene

ENSEMBL:
Gene Tree for RNU6-572P (if available)
TreeFam:
Gene Tree for RNU6-572P (if available)

Paralogs for RNU6-572P Gene

No data available for Paralogs for RNU6-572P Gene

Variants for RNU6-572P Gene

Additional Variant Information for RNU6-572P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-572P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-572P Gene

Disorders for RNU6-572P Gene

No disorders were found for RNU6-572P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-572P Gene

Publications for RNU6-572P Gene

No publications were found for RNU6-572P Gene.

Products for RNU6-572P Gene

Sources for RNU6-572P Gene

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