Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-553P Gene

Subcategory (RNA class) for RNU6-553P Gene

snRNA

Aliases for RNU6-553P Gene

  • RNA, U6 Small Nuclear 553, Pseudogene 2 3 5

External Ids for RNU6-553P Gene

ORGUL Members for RNU6-553P Gene

Previous GeneCards Identifiers for RNU6-553P Gene

  • GC04P106330
  • GC00U936104

Summaries for RNU6-553P Gene

GeneCards Summary for RNU6-553P Gene

RNU6-553P (RNA, U6 Small Nuclear 553, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-553P Gene

Genomics for RNU6-553P Gene

Regulatory Elements for RNU6-553P Gene

Enhancers for RNU6-553P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G105460 1.5 FANTOM5 Ensembl ENCODE 0.2 +54.5 54541 1.3 HDAC1 CBX3 ATF1 TBL1XR1 ARNT CHAMP1 TCF12 ZNF766 ELK1 GATA2 TET2 PPA2 RNU6-553P
GH04G105471 1.1 ENCODE 0.2 +66.0 66016 3.4 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 EEF1A1P9 TET2-AS1 PPA2 RNU6-553P
GH04G105469 0.7 FANTOM5 Ensembl 0.2 +63.1 63096 0.6 TET2 TET2-AS1 PPA2 RNU6-553P
GH04G105470 0.6 FANTOM5 Ensembl 0.2 +63.9 63924 0.4 TET2 TET2-AS1 PPA2 RNU6-553P
GH04G105462 0.5 FANTOM5 0.2 +55.7 55736 0.2 CBX5 CHAMP1 TET2 PPA2 RNU6-553P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-553P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-553P Gene

Chromosome:
4
Start:
105,406,997 bp from pter
End:
105,407,092 bp from pter
Size:
96 bases
Orientation:
Plus strand

Genomic View for RNU6-553P Gene

Genes around RNU6-553P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-553P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-553P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-553P Gene

Proteins for RNU6-553P Gene

Post-translational modifications for RNU6-553P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-553P Gene

Domains & Families for RNU6-553P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-553P Gene

Function for RNU6-553P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-553P Gene

Localization for RNU6-553P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-553P Gene

Pathways & Interactions for RNU6-553P Gene

SuperPathways for RNU6-553P Gene

No Data Available

Interacting Proteins for RNU6-553P Gene

Gene Ontology (GO) - Biological Process for RNU6-553P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-553P Gene

Transcripts for RNU6-553P Gene

mRNA/cDNA for RNU6-553P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-553P Gene

No ASD Table

Relevant External Links for RNU6-553P Gene

GeneLoc Exon Structure for
RNU6-553P
ECgene alternative splicing isoforms for
RNU6-553P

Expression for RNU6-553P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-553P Gene

genes like me logo Genes that share expression patterns with RNU6-553P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-553P Gene

Orthologs for RNU6-553P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-553P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm25008 35
  • 89 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 79 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 78 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35 35 35 35
  • 75 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U6 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 72 (a)
OneToMany
Species where no ortholog for RNU6-553P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-553P Gene

ENSEMBL:
Gene Tree for RNU6-553P (if available)
TreeFam:
Gene Tree for RNU6-553P (if available)

Paralogs for RNU6-553P Gene

No data available for Paralogs for RNU6-553P Gene

Variants for RNU6-553P Gene

Relevant External Links for RNU6-553P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-553P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-553P Gene

Disorders for RNU6-553P Gene

No disorders were found for RNU6-553P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-553P Gene

Publications for RNU6-553P Gene

No publications were found for RNU6-553P Gene.

Products for RNU6-553P Gene

Sources for RNU6-553P Gene

Content
Loading form....