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Aliases for RNU6-549P Gene

Subcategory (RNA class) for RNU6-549P Gene

snRNA

Aliases for RNU6-549P Gene

  • RNA, U6 Small Nuclear 549, Pseudogene 2 3 5

External Ids for RNU6-549P Gene

ORGUL Members for RNU6-549P Gene

Previous GeneCards Identifiers for RNU6-549P Gene

  • GC15P065047
  • GC00U934529
  • GC15P064720
  • GC15P065367
  • GC15P065432
  • GC15P066299
  • GC15P066849
  • GC15P067375
  • GC15P067901

Summaries for RNU6-549P Gene

GeneCards Summary for RNU6-549P Gene

RNU6-549P (RNA, U6 Small Nuclear 549, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-549P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-549P Gene

Genomics for RNU6-549P Gene

GeneHancer (GH) Regulatory Elements for RNU6-549P Gene

Promoters and enhancers for RNU6-549P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I064697 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 11.6 +29.7 29686 6.4 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF143 SP3 SP5 ENSG00000259635 TRIP4 RBPMS2 RNU6-549P ENSG00000249240 PLEKHO2 ENSG00000264937 OAZ2
GH15I064638 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12 -29.6 -29583 6.1 ELF3 FOXA2 MLX ARID4B ZSCAN9 RAD21 RARA ETS1 ZNF121 RCOR1 RBPMS2 TRIP4 PLEKHO2 RNU6-549P ENSG00000249240 ENSG00000252774 SNX22 LOC101930091 GC15P068604 ZNF609
GH15I064246 Enhancer 1.6 FANTOM5 Ensembl ENCODE 10.3 -422.7 -422736 4.5 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A FEZF1 TRIP4 CSNK1G1 PPIB ENSG00000252774 ENSG00000265967 RNU6-549P SNX22 HERC1 RBPMS2 ZNF609
GH15I064632 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.9 -36.1 -36128 5 PKNOX1 FOXA2 SMAD1 SIN3A DMAP1 YBX1 IRF4 ZNF280A ZNF121 ZNF207 RBPMS2 TRIP4 SLC24A1 RNU6-549P ZNF609 ENSG00000249240 PLEKHO2 SNX1 ENSG00000239465 LOC101930091
GH15I064730 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.1 +60.7 60712 2 PKNOX1 FOXA2 ARID4B SIN3A BRCA1 ZNF48 TCF12 SLC30A9 ARID2 ZNF207 TRIP4 MIR1272 RBPMS2 RNU6-549P ENSG00000249240 PLEKHO2 PIF1 SNX1 OAZ2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-549P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-549P Gene

Genomic Locations for RNU6-549P Gene
chr15:64,671,263-64,671,369
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-549P Gene

Genes around RNU6-549P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-549P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-549P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-549P Gene

Proteins for RNU6-549P Gene

Post-translational modifications for RNU6-549P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-549P Gene

Domains & Families for RNU6-549P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-549P Gene

Function for RNU6-549P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-549P Gene

Localization for RNU6-549P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-549P Gene

Pathways & Interactions for RNU6-549P Gene

SuperPathways for RNU6-549P Gene

No Data Available

Interacting Proteins for RNU6-549P Gene

Gene Ontology (GO) - Biological Process for RNU6-549P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-549P Gene

Drugs & Compounds for RNU6-549P Gene

No Compound Related Data Available

Transcripts for RNU6-549P Gene

mRNA/cDNA for RNU6-549P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-549P Gene

No ASD Table

Relevant External Links for RNU6-549P Gene

GeneLoc Exon Structure for
RNU6-549P
ECgene alternative splicing isoforms for
RNU6-549P

Expression for RNU6-549P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-549P Gene

genes like me logo Genes that share expression patterns with RNU6-549P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-549P Gene

Orthologs for RNU6-549P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-549P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24925 34
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 83 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 67 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 85 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 34
  • 82 (a)
ManyToMany
Species where no ortholog for RNU6-549P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-549P Gene

ENSEMBL:
Gene Tree for RNU6-549P (if available)
TreeFam:
Gene Tree for RNU6-549P (if available)

Paralogs for RNU6-549P Gene

No data available for Paralogs for RNU6-549P Gene

Variants for RNU6-549P Gene

Additional Variant Information for RNU6-549P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-549P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-549P Gene

Disorders for RNU6-549P Gene

No disorders were found for RNU6-549P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-549P Gene

Publications for RNU6-549P Gene

No publications were found for RNU6-549P Gene.

Products for RNU6-549P Gene

Sources for RNU6-549P Gene

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