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Aliases for RNU6-547P Gene

Aliases for RNU6-547P Gene

  • RNA, U6 Small Nuclear 547, Pseudogene 2 3 5

External Ids for RNU6-547P Gene

Previous GeneCards Identifiers for RNU6-547P Gene

  • GC03P172422
  • GC00U934886

Summaries for RNU6-547P Gene

GeneCards Summary for RNU6-547P Gene

RNU6-547P (RNA, U6 Small Nuclear 547, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-547P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-547P Gene

Genomics for RNU6-547P Gene

GeneHancer (GH) Regulatory Elements for RNU6-547P Gene

Promoters and enhancers for RNU6-547P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I172700 Enhancer 1 FANTOM5 Ensembl ENCODE 550.8 -1.7 -1688 2.1 NR2F1 CBFA2T3 ZNF644 NR2C1 ZSCAN29 PRDM10 NR2F6 PRDM1 NR2C2 RNU6-547P NCEH1 GC03M172695
GH03I172747 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 +47.1 47072 4.8 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 YY1 ECT2 NCEH1 RNU6-547P
GH03I172675 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.7 -26.3 -26323 3.6 CTCF JUN MAX CEBPG ZNF2 RAD21 TEAD3 ZNF143 SMC3 ZNF444 NCEH1 RNU6-547P LOC100420939 PIR41392
GH03I172672 Enhancer 1 Ensembl ENCODE 11.6 -29.6 -29609 1.8 ELF3 NFRKB ARID4B BRCA1 RAD21 RFX5 CHAMP1 ZNF143 MIXL1 SMARCA5 RNU6-547P NCEH1 PIR41392 LOC100420939
GH03I172476 Enhancer 1 Ensembl ENCODE 9.6 -225.8 -225824 1.8 PKNOX1 ATF1 ZSCAN9 RAD21 RFX5 YY1 ZNF335 GLIS2 ARID2 ZNF143 TNFSF10 GHSR RNU6-547P GC03P172523 LOC100856791
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-547P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-547P Gene

Genomic Locations for RNU6-547P Gene
chr3:172,703,124-172,703,225
(GRCh38/hg38)
Size:
102 bases
Orientation:
Plus strand

Genomic View for RNU6-547P Gene

Genes around RNU6-547P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-547P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-547P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-547P Gene

Proteins for RNU6-547P Gene

Post-translational modifications for RNU6-547P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-547P Gene

Domains & Families for RNU6-547P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-547P Gene

Function for RNU6-547P Gene

Phenotypes From GWAS Catalog for RNU6-547P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-547P Gene

Localization for RNU6-547P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-547P Gene

Pathways & Interactions for RNU6-547P Gene

SuperPathways for RNU6-547P Gene

No Data Available

Interacting Proteins for RNU6-547P Gene

Gene Ontology (GO) - Biological Process for RNU6-547P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-547P Gene

Drugs & Compounds for RNU6-547P Gene

No Compound Related Data Available

Transcripts for RNU6-547P Gene

mRNA/cDNA for RNU6-547P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-547P Gene

No ASD Table

Relevant External Links for RNU6-547P Gene

GeneLoc Exon Structure for
RNU6-547P
ECgene alternative splicing isoforms for
RNU6-547P

Expression for RNU6-547P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-547P Gene

genes like me logo Genes that share expression patterns with RNU6-547P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-547P Gene

Orthologs for RNU6-547P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-547P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 76 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26107 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 63 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 75 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 34
  • 71 (a)
ManyToMany
Species where no ortholog for RNU6-547P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-547P Gene

ENSEMBL:
Gene Tree for RNU6-547P (if available)
TreeFam:
Gene Tree for RNU6-547P (if available)

Paralogs for RNU6-547P Gene

No data available for Paralogs for RNU6-547P Gene

Variants for RNU6-547P Gene

Additional Variant Information for RNU6-547P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-547P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-547P Gene

Disorders for RNU6-547P Gene

No disorders were found for RNU6-547P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-547P Gene

Publications for RNU6-547P Gene

No publications were found for RNU6-547P Gene.

Products for RNU6-547P Gene

Sources for RNU6-547P Gene

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