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Aliases for RNU6-544P Gene

Subcategory (RNA class) for RNU6-544P Gene


Aliases for RNU6-544P Gene

  • RNA, U6 Small Nuclear 544, Pseudogene 2 3 5

External Ids for RNU6-544P Gene

ORGUL Members for RNU6-544P Gene

Previous GeneCards Identifiers for RNU6-544P Gene

  • GC11P080241
  • GC00U935489

Summaries for RNU6-544P Gene

GeneCards Summary for RNU6-544P Gene

RNU6-544P (RNA, U6 Small Nuclear 544, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-544P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-544P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-544P Gene

Genomics for RNU6-544P Gene

Regulatory Elements for RNU6-544P Gene

Enhancers for RNU6-544P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H080592 0.8 ENCODE 10.2 +66.8 66817 3.8 GTF2F1 ELF3 TBP SOX13 PKNOX1 FOXA2 JUN MAX ZNF644 RFX5 RNU6-544P ARL6IP1P3
GH11H080521 0.5 ENCODE 0.4 -6.0 -6041 0.2 FOS DPF2 RFX5 RNU6-544P ENSG00000254434
GH11H080529 0.2 ENCODE 0.7 +1.8 1838 1.3 RNU6-544P ARL6IP1P3
GH11H080524 0.2 ENCODE 0.7 -2.6 -2550 0.9 RNU6-544P ENSG00000254434
GH11H080414 0.6 ENCODE 0.1 -113.0 -112969 0.2 JUN MNT CEBPG ATF2 GATA3 FOSL2 ATF7 CUX1 FOS PRDM1 ENSG00000254434 RNU6-544P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-544P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-544P Gene

Genomic Locations for RNU6-544P Gene
107 bases
Plus strand

Genomic View for RNU6-544P Gene

Genes around RNU6-544P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-544P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-544P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-544P Gene

ORGUL Member Location for RNU6-544P Gene

ORGUL Member Location for RNU6-544P gene

Proteins for RNU6-544P Gene

Post-translational modifications for RNU6-544P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-544P Gene

Domains & Families for RNU6-544P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-544P Gene

Function for RNU6-544P Gene

Phenotypes From GWAS Catalog for RNU6-544P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-544P Gene

Localization for RNU6-544P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-544P Gene

Pathways & Interactions for RNU6-544P Gene

SuperPathways for RNU6-544P Gene

No Data Available

Interacting Proteins for RNU6-544P Gene

Gene Ontology (GO) - Biological Process for RNU6-544P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6-544P Gene

Drugs & Compounds for RNU6-544P Gene

No Compound Related Data Available

Transcripts for RNU6-544P Gene

mRNA/cDNA for RNU6-544P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-544P Gene

No ASD Table

Relevant External Links for RNU6-544P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6-544P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-544P Gene

genes like me logo Genes that share expression patterns with RNU6-544P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-544P Gene

Orthologs for RNU6-544P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-544P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
(Canis familiaris)
Mammalia U6 34
  • 78 (a)
(Mus musculus)
Mammalia Gm24593 34
  • 78 (a)
(Monodelphis domestica)
Mammalia U6 34 34
  • 63 (a)
Species where no ortholog for RNU6-544P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-544P Gene

Gene Tree for RNU6-544P (if available)
Gene Tree for RNU6-544P (if available)

Paralogs for RNU6-544P Gene

No data available for Paralogs for RNU6-544P Gene

Variants for RNU6-544P Gene

Relevant External Links for RNU6-544P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-544P Gene

Disorders for RNU6-544P Gene

No disorders were found for RNU6-544P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-544P Gene

Publications for RNU6-544P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-544P Gene

Sources for RNU6-544P Gene

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