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RNU6-543P Gene(Pseudogene)

RNA, U6 Small Nuclear 543, Pseudogene

GCID:
GC10P063110
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RNU6-543P Gene

Subcategory (RNA class) for RNU6-543P Gene

snRNA

Aliases for RNU6-543P Gene

  • RNA, U6 Small Nuclear 543, Pseudogene 2 3 5

External Ids for RNU6-543P Gene

ORGUL Members for RNU6-543P Gene

Previous GeneCards Identifiers for RNU6-543P Gene

  • GC10P064871
  • GC00U934539

Summaries for RNU6-543P Gene

GeneCards Summary for RNU6-543P Gene

RNU6-543P (RNA, U6 Small Nuclear 543, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-543P Gene

Genomics for RNU6-543P Gene

Products:

  1. Regulatory Element

Regulatory Elements for RNU6-543P Gene

Enhancers for RNU6-543P Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNU6-543P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-543P Gene

Chromosome:
10
Start:
63,110,139 bp from pter
End:
63,110,246 bp from pter
Size:
108 bases
Orientation:
Plus strand

Genomic View for RNU6-543P Gene

Genes around RNU6-543P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-543P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-543P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for RNU6-543P Gene

Proteins for RNU6-543P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-543P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-543P Gene

Domains & Families for RNU6-543P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-543P Gene

Function for RNU6-543P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-543P Gene

Localization for RNU6-543P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-543P Gene

Pathways & Interactions for RNU6-543P Gene

SuperPathways for RNU6-543P Gene

PathCards logoMore details on SuperPathways for RNU6-543P
No Data Available

Interacting Proteins for RNU6-543P Gene

Gene Ontology (GO) - Biological Process for RNU6-543P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-543P Gene

Drugs & Compounds for RNU6-543P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-543P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RNU6-543P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-543P Gene

No ASD Table

Relevant External Links for RNU6-543P Gene

GeneLoc Exon Structure for
RNU6-543P
ECgene alternative splicing isoforms for
RNU6-543P

Expression for RNU6-543P Gene

Products:

  1. Primer

mRNA expression in normal human tissues for RNU6-543P Gene

mRNA expression in normal human tissues for RNU6-543P Gene
mRNA expression by GTEx for RNU6-543P Gene
genes like me logo Genes that share expression patterns with RNU6-543P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNU6-543P Gene

Orthologs for RNU6-543P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-543P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia U6 36
  • 86 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia U6 36
  • 90 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm24762 36
  • 83 (a)
 ManyToMany
chimpanzee
(Pan troglodytes)
 Mammalia U6 36
  • 100 (a)
 OneToOne
Species with no ortholog for RNU6-543P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-543P Gene

ENSEMBL:
Gene Tree for RNU6-543P (if available)
TreeFam:
Gene Tree for RNU6-543P (if available)

Paralogs for RNU6-543P Gene

No data available for Paralogs for RNU6-543P Gene

Variants for RNU6-543P Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RNU6-543P Gene

Disorders for RNU6-543P Gene

No disorders were found for RNU6-543P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-543P Gene

Publications for RNU6-543P Gene

No publications were found for RNU6-543P Gene.

Products for RNU6-543P Gene

Sources for RNU6-543P Gene

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