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Aliases for RNU6-541P Gene

Subcategory (RNA class) for RNU6-541P Gene

snRNA

Aliases for RNU6-541P Gene

  • RNA, U6 Small Nuclear 541, Pseudogene 2 3 5

External Ids for RNU6-541P Gene

ORGUL Members for RNU6-541P Gene

Previous GeneCards Identifiers for RNU6-541P Gene

  • GC14P031616
  • GC00U935790

Summaries for RNU6-541P Gene

GeneCards Summary for RNU6-541P Gene

RNU6-541P (RNA, U6 Small Nuclear 541, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-541P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-541P Gene

Genomics for RNU6-541P Gene

GeneHancer (GH) Regulatory Elements for RNU6-541P Gene

Promoters and enhancers for RNU6-541P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I031089 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.5 -51.7 -51705 3.3 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ATF7 FOS RXRA RNU6-541P GPR33 STRN3 SCFD1 RPL21P5 AP4S1
GH14I031164 Enhancer 1 Ensembl ENCODE 12.3 +22.8 22752 2.6 FOXA2 RARA FOS MIXL1 RXRA CEBPB PPARG SP1 NFIL3 MIER3 RNU6-541P HECTD1 G2E3
GH14I031355 Enhancer 1.1 Ensembl ENCODE 11.1 +213.2 213237 1.1 ELF3 ARID4B RAD21 RFX5 SCRT2 ZNF143 SMARCC2 RCOR1 RUNX3 THAP11 LOC101927124 HEATR5A RNU6-541P HECTD1 ATP5MC1P2 ENSG00000203546
GH14I030980 Enhancer 1 Ensembl ENCODE 11.5 -162.5 -162538 0.8 ARID4B SIN3A ZNF48 RAD21 RFX5 ARID2 EGR1 ZNF143 THAP11 MIXL1 MIR624 AP4S1 RNU6-541P STRN3 HIGD1AP17
GH14I031377 Enhancer 1.1 Ensembl ENCODE 10.1 +235.2 235172 1.3 FOXA2 MLX ARID4B DMAP1 SLC30A9 TCF12 RUNX3 RXRA SP5 NFYC HEATR5A LOC101927124 HECTD1 RNU6-541P NUBPL ENSG00000203546 ATP5MC1P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-541P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-541P Gene

Genomic Locations for RNU6-541P Gene
chr14:31,142,939-31,143,048
(GRCh38/hg38)
Size:
110 bases
Orientation:
Plus strand

Genomic View for RNU6-541P Gene

Genes around RNU6-541P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-541P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-541P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-541P Gene

Proteins for RNU6-541P Gene

Post-translational modifications for RNU6-541P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-541P Gene

Domains & Families for RNU6-541P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-541P Gene

Function for RNU6-541P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-541P Gene

Localization for RNU6-541P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-541P Gene

Pathways & Interactions for RNU6-541P Gene

SuperPathways for RNU6-541P Gene

No Data Available

Interacting Proteins for RNU6-541P Gene

Gene Ontology (GO) - Biological Process for RNU6-541P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-541P Gene

Drugs & Compounds for RNU6-541P Gene

No Compound Related Data Available

Transcripts for RNU6-541P Gene

mRNA/cDNA for RNU6-541P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-541P Gene

No ASD Table

Relevant External Links for RNU6-541P Gene

GeneLoc Exon Structure for
RNU6-541P
ECgene alternative splicing isoforms for
RNU6-541P

Expression for RNU6-541P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-541P Gene

genes like me logo Genes that share expression patterns with RNU6-541P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-541P Gene

Orthologs for RNU6-541P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-541P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 82 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 79 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23216 34
  • 77 (a)
ManyToMany
Species where no ortholog for RNU6-541P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-541P Gene

ENSEMBL:
Gene Tree for RNU6-541P (if available)
TreeFam:
Gene Tree for RNU6-541P (if available)

Paralogs for RNU6-541P Gene

No data available for Paralogs for RNU6-541P Gene

Variants for RNU6-541P Gene

Additional Variant Information for RNU6-541P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-541P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-541P Gene

Disorders for RNU6-541P Gene

No disorders were found for RNU6-541P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-541P Gene

Publications for RNU6-541P Gene

No publications were found for RNU6-541P Gene.

Products for RNU6-541P Gene

Sources for RNU6-541P Gene

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