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Aliases for RNU6-500P Gene

Subcategory (RNA class) for RNU6-500P Gene

snRNA

Aliases for RNU6-500P Gene

  • RNA, U6 Small Nuclear 500, Pseudogene 2 3 5

External Ids for RNU6-500P Gene

ORGUL Members for RNU6-500P Gene

Previous GeneCards Identifiers for RNU6-500P Gene

  • GC05M172791
  • GC00U935093

Summaries for RNU6-500P Gene

GeneCards Summary for RNU6-500P Gene

RNU6-500P (RNA, U6 Small Nuclear 500, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-500P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-500P Gene

Genomics for RNU6-500P Gene

GeneHancer (GH) Regulatory Elements for RNU6-500P Gene

Promoters and enhancers for RNU6-500P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I173322 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.7 +34.6 34636 9.6 CLOCK MLX FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 STC2 SH3PXD2B BOD1 LOC100268168 RNU6-500P LOC285593 BNIP1 CREBRF GC05M173296 GC05P173099
GH05I173471 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10 -111.9 -111938 5.5 CLOCK FOXA2 NFIB NEUROD1 E2F8 FOS MIER2 ZNF592 SP1 ZNF217 RNU6-500P ATP6V0E1 ENSG00000253141 LOC105377733 LOC105377732
GH05I173333 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +28.0 27969 2 JUN CEBPB CEBPG EP300 ATF2 ATF4 JUND ZNF316 POLR2A STAT3 GC05P173335 RNU6-500P STC2 MIR8056 GC05P173099
GH05I173319 Enhancer 0.7 ENCODE dbSUPER 10.9 +42.0 41950 1.8 CTCF POLR2A HNF4G ZNF398 HNF4A RFX5 RNU6-500P STC2 GC05M173296 GC05P173099
GH05I173278 Enhancer 0.7 VISTA dbSUPER 10.5 +82.5 82473 2.9 ADNP SCRT2 ZNF133 ZMYM3 ENSG00000254295 LOC100268168 RPL26L1 RNU6-500P LOC105377731 RNA5SP200 GC05P173099
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-500P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-500P Gene

Genomic Locations for RNU6-500P Gene
chr5:173,362,134-173,362,240
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-500P Gene

Genes around RNU6-500P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-500P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-500P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-500P Gene

Proteins for RNU6-500P Gene

Post-translational modifications for RNU6-500P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-500P Gene

Domains & Families for RNU6-500P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-500P Gene

Function for RNU6-500P Gene

Phenotypes From GWAS Catalog for RNU6-500P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-500P Gene

Localization for RNU6-500P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-500P Gene

Pathways & Interactions for RNU6-500P Gene

SuperPathways for RNU6-500P Gene

No Data Available

Interacting Proteins for RNU6-500P Gene

Gene Ontology (GO) - Biological Process for RNU6-500P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-500P Gene

Drugs & Compounds for RNU6-500P Gene

No Compound Related Data Available

Transcripts for RNU6-500P Gene

mRNA/cDNA for RNU6-500P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-500P Gene

No ASD Table

Relevant External Links for RNU6-500P Gene

GeneLoc Exon Structure for
RNU6-500P
ECgene alternative splicing isoforms for
RNU6-500P

Expression for RNU6-500P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-500P Gene

genes like me logo Genes that share expression patterns with RNU6-500P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-500P Gene

Orthologs for RNU6-500P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-500P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25039 34
  • 89 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 86 (a)
OneToOne
Species where no ortholog for RNU6-500P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-500P Gene

ENSEMBL:
Gene Tree for RNU6-500P (if available)
TreeFam:
Gene Tree for RNU6-500P (if available)

Paralogs for RNU6-500P Gene

No data available for Paralogs for RNU6-500P Gene

Variants for RNU6-500P Gene

Additional Variant Information for RNU6-500P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-500P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-500P Gene

Disorders for RNU6-500P Gene

No disorders were found for RNU6-500P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-500P Gene

Publications for RNU6-500P Gene

No publications were found for RNU6-500P Gene.

Products for RNU6-500P Gene

Sources for RNU6-500P Gene

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