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Aliases for RNU6-454P Gene

Subcategory (RNA class) for RNU6-454P Gene

snRNA

Aliases for RNU6-454P Gene

  • RNA, U6 Small Nuclear 454, Pseudogene 2 3 5

External Ids for RNU6-454P Gene

ORGUL Members for RNU6-454P Gene

Previous GeneCards Identifiers for RNU6-454P Gene

  • GC00U935753

Summaries for RNU6-454P Gene

GeneCards Summary for RNU6-454P Gene

RNU6-454P (RNA, U6 Small Nuclear 454, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-454P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-454P Gene

Genomics for RNU6-454P Gene

GeneHancer (GH) Regulatory Elements for RNU6-454P Gene

Promoters and enhancers for RNU6-454P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I015339 Enhancer 1 Ensembl ENCODE 550.8 +0.3 339 0.2 HDAC1 HDGF ATF1 ARNT TCF12 FOS ETV6 ATF7 ZBTB2 NCOA1 GC03P015339 RNU6-454P SH3BP5
GH03I015341 Promoter 0.5 EPDnew 550.8 +1.7 1651 0.1 GC03P015339 RNU6-454P SH3BP5 GC03M015375
GH03I015267 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 11.7 -68.7 -68696 6.3 HDGF HNRNPUL1 PKNOX1 ARNT SIN3A IRF4 POLR2B CBX5 ZNF207 ZNF143 SH3BP5 CCDC174 SH3BP5-AS1 CAPN7 NR2C2 RNU6-454P COL6A4P1 RNU6-1024P RBSN FGD5-AS1
GH03I015287 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -47.3 -47297 10.9 HNRNPUL1 PKNOX1 CLOCK ATF1 NEUROD1 SIN3A BRCA1 YY1 TCF12 GATA2 SH3BP5 CAPN7 CCDC174 EAF1 NR2C2 RPS24P10 SH3BP5-AS1 RNU6-454P COL6A4P1 RNU6-1024P
GH03I015299 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12 -38.8 -38811 2.7 PKNOX1 INSM2 KLF17 MZF1 ZBTB40 ZNF335 ZNF366 RCOR1 FOS ETV6 SH3BP5 EAF1 RNU6-454P EAF1-AS1 COLQ ANKRD28 CAPN7 NR2C2 GC03P015339 PIR49400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-454P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-454P Gene

Genomic Locations for RNU6-454P Gene
chr3:15,339,749-15,339,855
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-454P Gene

Genes around RNU6-454P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-454P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-454P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RNU6-454P Gene

Proteins for RNU6-454P Gene

Post-translational modifications for RNU6-454P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-454P Gene

Domains & Families for RNU6-454P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-454P Gene

Function for RNU6-454P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-454P Gene

Localization for RNU6-454P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-454P Gene

Pathways & Interactions for RNU6-454P Gene

SuperPathways for RNU6-454P Gene

No Data Available

Interacting Proteins for RNU6-454P Gene

Gene Ontology (GO) - Biological Process for RNU6-454P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-454P Gene

Drugs & Compounds for RNU6-454P Gene

No Compound Related Data Available

Transcripts for RNU6-454P Gene

mRNA/cDNA for RNU6-454P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-454P Gene

No ASD Table

Relevant External Links for RNU6-454P Gene

GeneLoc Exon Structure for
RNU6-454P
ECgene alternative splicing isoforms for
RNU6-454P

Expression for RNU6-454P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-454P Gene

genes like me logo Genes that share expression patterns with RNU6-454P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-454P Gene

Orthologs for RNU6-454P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-454P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 81 (a)
OneToMany
Species where no ortholog for RNU6-454P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-454P Gene

ENSEMBL:
Gene Tree for RNU6-454P (if available)
TreeFam:
Gene Tree for RNU6-454P (if available)

Paralogs for RNU6-454P Gene

No data available for Paralogs for RNU6-454P Gene

Variants for RNU6-454P Gene

Additional Variant Information for RNU6-454P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-454P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-454P Gene

Disorders for RNU6-454P Gene

No disorders were found for RNU6-454P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-454P Gene

Publications for RNU6-454P Gene

No publications were found for RNU6-454P Gene.

Products for RNU6-454P Gene

Sources for RNU6-454P Gene

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