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Aliases for RNU6-42P Gene

Subcategory (RNA class) for RNU6-42P Gene

snRNA

Aliases for RNU6-42P Gene

  • RNA, U6 Small Nuclear 42, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 42 2
  • RNU6-42 3

External Ids for RNU6-42P Gene

ORGUL Members for RNU6-42P Gene

Previous HGNC Symbols for RNU6-42P Gene

  • RNU6-42

Previous GeneCards Identifiers for RNU6-42P Gene

  • GC03M196514

Summaries for RNU6-42P Gene

GeneCards Summary for RNU6-42P Gene

RNU6-42P (RNA, U6 Small Nuclear 42, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-42P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-42P Gene

Genomics for RNU6-42P Gene

Regulatory Elements for RNU6-42P Gene

Enhancers for RNU6-42P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H196753 1.1 Ensembl ENCODE 12.6 +30.6 30579 2 ELF3 ZFP64 ARID4B SIN3A DMAP1 THRB GATA2 THAP11 MXD4 ELF1 RNU6-42P CEP19 PAK2 GC03P196755 RNU4-89P
GH03H196687 1.2 Ensembl ENCODE dbSUPER 10.8 +96.6 96586 1 CEBPB MAX EBF1 CEBPG GABPA ZFHX2 POLR2A EGR1 ETV6 MYC CEP19 PIGX LINC01063 RNU6-42P MELTF-AS1 GC03M196709
GH03H196757 0.8 ENCODE 12.6 +26.9 26862 0 FOXA2 JUN CEBPG ZNF324 HIC1 FOSL2 FOS ATF7 HLF ZFP37 RNU6-42P CEP19 GC03P196755 GC03M196785
GH03H196787 0.8 ENCODE 0.7 -3.2 -3151 1 CTCF FOXA2 SIN3A ZIC2 RAD21 CTBP1 GATA3 POLR2A FOXK2 ZNF600 PIGX PAK2 GC03M196785 RNU6-42P PIR61186
GH03H196790 1.1 Ensembl ENCODE 0.4 -7.5 -7502 5 FOXA2 NFIB SIN3A BRCA1 RAD21 ZBTB40 RFX5 RCOR1 FOS SMARCA5 CEP19 SENP5 NCBP2-AS1 NCBP2 MELTF-AS1 PIGX PAK2 SDHAP1 TCTEX1D2 GC03M196785
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6-42P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-42P Gene

Chromosome:
3
Start:
196,784,980 bp from pter
End:
196,785,086 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-42P Gene

Genes around RNU6-42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-42P Gene

Proteins for RNU6-42P Gene

Post-translational modifications for RNU6-42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-42P Gene

Domains & Families for RNU6-42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-42P Gene

Function for RNU6-42P Gene

Phenotypes From GWAS Catalog for RNU6-42P Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU6-42P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-42P Gene

Localization for RNU6-42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-42P Gene

Pathways & Interactions for RNU6-42P Gene

SuperPathways for RNU6-42P Gene

No Data Available

Interacting Proteins for RNU6-42P Gene

Gene Ontology (GO) - Biological Process for RNU6-42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-42P Gene

Drugs & Compounds for RNU6-42P Gene

No Compound Related Data Available

Transcripts for RNU6-42P Gene

mRNA/cDNA for RNU6-42P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNU6-42P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-42P Gene

No ASD Table

Relevant External Links for RNU6-42P Gene

GeneLoc Exon Structure for
RNU6-42P
ECgene alternative splicing isoforms for
RNU6-42P

Expression for RNU6-42P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-42P Gene

genes like me logo Genes that share expression patterns with RNU6-42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-42P Gene

Orthologs for RNU6-42P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-42P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 34 34
  • 98 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22749 34
  • 97 (a)
ManyToMany
Gm25628 34
  • 93 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 97 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 96 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 95 (a)
ManyToMany
Species where no ortholog for RNU6-42P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-42P Gene

ENSEMBL:
Gene Tree for RNU6-42P (if available)
TreeFam:
Gene Tree for RNU6-42P (if available)

Paralogs for RNU6-42P Gene

No data available for Paralogs for RNU6-42P Gene

Variants for RNU6-42P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-42P Gene

Variant ID Type Subtype PubMed ID
dgv1445e212 CNV loss 25503493
dgv1446e212 CNV loss 25503493
dgv5035n100 CNV gain 25217958
esv2763775 CNV gain+loss 21179565
esv3599293 CNV gain 21293372
nsv1001045 CNV gain 25217958
nsv1003135 CNV gain 25217958
nsv1009975 CNV gain 25217958
nsv1014692 CNV gain 25217958
nsv829829 CNV loss 17160897

Relevant External Links for RNU6-42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-42P Gene

Disorders for RNU6-42P Gene

No disorders were found for RNU6-42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-42P Gene

Publications for RNU6-42P Gene

No publications were found for RNU6-42P Gene.

Products for RNU6-42P Gene

Sources for RNU6-42P Gene

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