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Aliases for RNU6-41P Gene

Subcategory (RNA class) for RNU6-41P Gene

snRNA

Aliases for RNU6-41P Gene

  • RNA, U6 Small Nuclear 41, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 41 2
  • RNU6-41 3

External Ids for RNU6-41P Gene

ORGUL Members for RNU6-41P Gene

Previous HGNC Symbols for RNU6-41P Gene

  • RNU6-41

Previous GeneCards Identifiers for RNU6-41P Gene

  • GC01M182954

Summaries for RNU6-41P Gene

GeneCards Summary for RNU6-41P Gene

RNU6-41P (RNA, U6 Small Nuclear 41, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-41P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-41P Gene

Genomics for RNU6-41P Gene

GeneHancer (GH) Regulatory Elements for RNU6-41P Gene

Promoters and enhancers for RNU6-41P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I183021 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 -42.4 -42381 7 HDGF PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 LAMC1 LAMC1-AS1 DHX9 HMGN1P4 SMG7 RNU6-41P
GH01I183028 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -47.6 -47597 2.7 FOXA2 MLX ARID4B DMAP1 BRCA1 ZNF48 SLC30A9 ATF7 FOS KLF13 LAMC1-AS1 LAMC1 RNU6-41P
GH01I183058 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.1 -77.7 -77718 3.2 PKNOX1 FOXA2 NEUROD1 FEZF1 ZNF2 ZNF213 FOS KLF13 SP3 JUNB LAMC1-AS1 LAMC1 DHX9 HMGN1P4 RNU6-41P
GH01I183270 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -289.9 -289928 4.2 MZF1 FEZF1 RFX5 ZNF366 ATF7 IKZF2 RUNX3 SMARCC1 NFYA ZC3H11A DHX9 RNU6-41P LAMC2 LAMC1 RPS3AP8 NMNAT2
GH01I183233 Enhancer 1.2 Ensembl ENCODE 9.9 -253.2 -253179 3.1 HDGF SIN3A FEZF1 ZNF2 GTF3C2 ZNF121 ZNF766 GLIS2 ZNF213 FOS LAMC2 HMGN1P4 DHX9 SHCBP1L LOC100271717 SMG7 RNU6-41P RPS3AP8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-41P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-41P Gene

Genomic Locations for RNU6-41P Gene
chr1:182,982,212-182,982,318
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand
chr1:182,951,347-182,951,453
(GRCh37/hg19)

Genomic View for RNU6-41P Gene

Genes around RNU6-41P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-41P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-41P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RNU6-41P Gene

Proteins for RNU6-41P Gene

Post-translational modifications for RNU6-41P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-41P Gene

Domains & Families for RNU6-41P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-41P Gene

Function for RNU6-41P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-41P Gene

Localization for RNU6-41P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-41P Gene

Pathways & Interactions for RNU6-41P Gene

SuperPathways for RNU6-41P Gene

No Data Available

Interacting Proteins for RNU6-41P Gene

Gene Ontology (GO) - Biological Process for RNU6-41P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-41P Gene

Drugs & Compounds for RNU6-41P Gene

No Compound Related Data Available

Transcripts for RNU6-41P Gene

mRNA/cDNA for RNU6-41P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-41P Gene

No ASD Table

Relevant External Links for RNU6-41P Gene

GeneLoc Exon Structure for
RNU6-41P
ECgene alternative splicing isoforms for
RNU6-41P

Expression for RNU6-41P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-41P Gene

genes like me logo Genes that share expression patterns with RNU6-41P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-41P Gene

Orthologs for RNU6-41P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-41P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm25126 34
  • 98 (a)
OneToMany
Gm22911 34
  • 97 (a)
OneToMany
Gm25404 34
  • 97 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 34 34
  • 94 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 93 (a)
ManyToMany
Species where no ortholog for RNU6-41P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-41P Gene

ENSEMBL:
Gene Tree for RNU6-41P (if available)
TreeFam:
Gene Tree for RNU6-41P (if available)

Paralogs for RNU6-41P Gene

No data available for Paralogs for RNU6-41P Gene

Variants for RNU6-41P Gene

Additional Variant Information for RNU6-41P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-41P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-41P Gene

Disorders for RNU6-41P Gene

No disorders were found for RNU6-41P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-41P Gene

Publications for RNU6-41P Gene

No publications were found for RNU6-41P Gene.

Products for RNU6-41P Gene

Sources for RNU6-41P Gene

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