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Aliases for RNU6-415P Gene

Aliases for RNU6-415P Gene

  • RNA, U6 Small Nuclear 415, Pseudogene 2 3 5

External Ids for RNU6-415P Gene

Previous GeneCards Identifiers for RNU6-415P Gene

  • GC15M079194
  • GC00U935542

Summaries for RNU6-415P Gene

GeneCards Summary for RNU6-415P Gene

RNU6-415P (RNA, U6 Small Nuclear 415, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-415P Gene

Genomics for RNU6-415P Gene

Regulatory Elements for RNU6-415P Gene

Enhancers for RNU6-415P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F078877 1.1 ENCODE 12.8 +21.8 21846 0.1 KLF1 ZNF362 MAZ RFX1 ZMYM3 ZNF384 IKZF1 ZNF600 PRDM1 ZBTB17 RNU6-415P ADAMTS7 ENSG00000177699 CTSH MORF4L1 RPL21P116
GH15F078876 0.6 ENCODE 12.8 +22.4 22423 0.2 CTCF MAZ TFE3 YY2 ZIC2 RAD21 ZNF316 GLIS1 ZNF580 WT1 RNU6-415P ENSG00000177699 RPL21P116
GH15F078871 0.2 ENCODE 12.7 +25.1 25129 4.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 IREB2 ENSG00000259562 HYKK WDR61 ENSG00000259322 TBC1D2B RNU6-415P ENSG00000260988 ENSG00000177699 ADAMTS7P3
GH15F078924 0.6 FANTOM5 11.9 -25.5 -25509 0.4 POLR2A SCRT2 CTSH RNU6-415P ENSG00000177699 RASGRF1 ENSG00000279235
GH15F078878 0.8 ENCODE 0.3 +19.6 19550 2.8 CTCF ATF1 ESRRA KLF1 SIN3A FEZF1 ZIC2 ZNF316 GLIS2 ZFHX2 ENSG00000177699 MORF4L1 ADAMTS7 CTSH RNU6-415P RPL21P116
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6-415P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-415P Gene

Chromosome:
15
Start:
78,898,840 bp from pter
End:
78,898,936 bp from pter
Size:
97 bases
Orientation:
Minus strand

Genomic View for RNU6-415P Gene

Genes around RNU6-415P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-415P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-415P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-415P Gene

Proteins for RNU6-415P Gene

Post-translational modifications for RNU6-415P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-415P Gene

Domains & Families for RNU6-415P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-415P Gene

Function for RNU6-415P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-415P Gene

Localization for RNU6-415P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-415P Gene

Pathways & Interactions for RNU6-415P Gene

SuperPathways for RNU6-415P Gene

No Data Available

Interacting Proteins for RNU6-415P Gene

Gene Ontology (GO) - Biological Process for RNU6-415P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-415P Gene

Transcripts for RNU6-415P Gene

mRNA/cDNA for RNU6-415P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-415P Gene

No ASD Table

Relevant External Links for RNU6-415P Gene

GeneLoc Exon Structure for
RNU6-415P
ECgene alternative splicing isoforms for
RNU6-415P

Expression for RNU6-415P Gene

mRNA expression in normal human tissues for RNU6-415P Gene

genes like me logo Genes that share expression patterns with RNU6-415P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-415P Gene

Orthologs for RNU6-415P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-415P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 72 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22838 35
  • 55 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 50 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii U6 35
  • 59 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 35
  • 63 (a)
OneToMany
Species where no ortholog for RNU6-415P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-415P Gene

ENSEMBL:
Gene Tree for RNU6-415P (if available)
TreeFam:
Gene Tree for RNU6-415P (if available)

Paralogs for RNU6-415P Gene

No data available for Paralogs for RNU6-415P Gene

Variants for RNU6-415P Gene

Relevant External Links for RNU6-415P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-415P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-415P Gene

Disorders for RNU6-415P Gene

No disorders were found for RNU6-415P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-415P Gene

Publications for RNU6-415P Gene

No publications were found for RNU6-415P Gene.

Products for RNU6-415P Gene

Sources for RNU6-415P Gene

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