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Aliases for RNU6-39P Gene

Subcategory (RNA class) for RNU6-39P Gene

snRNA

Aliases for RNU6-39P Gene

  • RNA, U6 Small Nuclear 39, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 39 2
  • RNU6-39 3

External Ids for RNU6-39P Gene

ORGUL Members for RNU6-39P Gene

Previous HGNC Symbols for RNU6-39P Gene

  • RNU6-39

Previous GeneCards Identifiers for RNU6-39P Gene

  • GC18P066529

Summaries for RNU6-39P Gene

GeneCards Summary for RNU6-39P Gene

RNU6-39P (RNA, U6 Small Nuclear 39, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-39P Gene

Genomics for RNU6-39P Gene

Regulatory Elements for RNU6-39P Gene

Enhancers for RNU6-39P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F068837 0.8 Ensembl ENCODE 12.3 -20.9 -20886 1.9 JUND SMARCA4 JUN CEBPB FOS RNU6-39P CCDC102B GC18M068825 GC18P068859
GH18F068816 1.2 FANTOM5 ENCODE 11.4 -41.2 -41199 1.6 BHLHE40 FOS NFE2L2 RNU6-39P CCDC102B GC18M068825 LOC105372176
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNU6-39P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6-39P Gene

Chromosome:
18
Start:
68,858,934 bp from pter
End:
68,859,040 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-39P Gene

Genes around RNU6-39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-39P Gene

Proteins for RNU6-39P Gene

Post-translational modifications for RNU6-39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-39P Gene

Domains & Families for RNU6-39P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-39P Gene

Function for RNU6-39P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-39P Gene

Localization for RNU6-39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNU6-39P Gene

Pathways & Interactions for RNU6-39P Gene

SuperPathways for RNU6-39P Gene

No Data Available

Interacting Proteins for RNU6-39P Gene

Gene Ontology (GO) - Biological Process for RNU6-39P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-39P Gene

Transcripts for RNU6-39P Gene

mRNA/cDNA for RNU6-39P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-39P Gene

No ASD Table

Relevant External Links for RNU6-39P Gene

GeneLoc Exon Structure for
RNU6-39P
ECgene alternative splicing isoforms for
RNU6-39P

Expression for RNU6-39P Gene

mRNA expression in normal human tissues for RNU6-39P Gene

genes like me logo Genes that share expression patterns with RNU6-39P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNU6-39P Gene

Orthologs for RNU6-39P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-39P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm23144 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 95 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 93 (a)
OneToMany
Species where no ortholog for RNU6-39P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-39P Gene

ENSEMBL:
Gene Tree for RNU6-39P (if available)
TreeFam:
Gene Tree for RNU6-39P (if available)

Paralogs for RNU6-39P Gene

No data available for Paralogs for RNU6-39P Gene

Variants for RNU6-39P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-39P Gene

Variant ID Type Subtype PubMed ID
dgv3390n100 CNV gain 25217958
esv3642952 CNV loss 21293372
esv3893127 CNV gain 25118596
nsv458117 CNV gain 19166990
nsv458144 CNV gain 19166990
nsv577329 CNV gain 21841781
nsv577370 CNV gain 21841781
nsv833684 CNV loss 17160897

Relevant External Links for RNU6-39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-39P Gene

Disorders for RNU6-39P Gene

No disorders were found for RNU6-39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-39P Gene

Publications for RNU6-39P Gene

No publications were found for RNU6-39P Gene.

Products for RNU6-39P Gene

Sources for RNU6-39P Gene

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